Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20fragile_20[genbank_20GCA_5F000956335.1_202015-03-20] 248 sequences; 25,914,542 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq11 176 5e-39 >seq11 Length=477202 Score = 176 bits (194), Expect = 5e-39 Identities = 584/898 (65%), Gaps = 13/898 (1%) Strand=Plus/Minus Query 110329 GTGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGA 110388 || ||||| | ||| || ||||||||| || || ||| ||||| ||||||||| Sbjct 52043 GTATATTCAATAATCTCACAACACAAGTTACTACATTTGATGGTACCCAGATTCTTCTGA 51984 Query 110389 TTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGT 110448 |||||||| | || || | ||||||||| | |||||| || ||||||||| | | | Sbjct 51983 TTCGATTTAGCATTACAAGAATCCTTATACAACATGTAAGGAACACCAGTTTC--TATTT 51926 Query 110449 GACTTG--AGAATGGCCTTCCATACATCGGCGGCGGGGACAGTTGCGTTAGCGAGACCTT 110506 ||||| | |||||| ||||| ||| || | || ||| || | | | || Sbjct 51925 GACTTTGTAAAATGGCAAACCATAAATCTTGTGCCAGCACCGTTTTTTTCCCCATATTTT 51866 Query 110507 CCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCT 110566 | || || || || ||| | | || ||||| | ||| | ||| | ||||| Sbjct 51865 CTTCTTCATATTTTAAGTAGAGTTTTTCGAATTCTTCTCCCCATGACTCACTTA-ACCCT 51807 Query 110567 TCGCCTTG-TCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAAC 110625 | || | || || | ||| | ||||||| | |||| || |||||||| ||| Sbjct 51806 GGACATTCATTTGGGCACATGAGAGTCCAATTTTGATTTTCCTTCACTCTCTTCATAAAC 51747 Query 110626 AGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGG 110685 | |||||| | ||||| || | ||||| || || ||| ||||| | ||| || Sbjct 51746 AAGTCAGGTACCCACACAGCATAAAAAAGATCTCGAGCTCGAAGTTCTTCCTTACCATGA 51687 Query 110686 TTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCG 110745 || | || || ||||| || | || || || ||||||||||| | ||| || || Sbjct 51686 TTTTTTCTTAAATCTAAAAATTCAAAAATGTCTGAATGCCATGGTTCAATATAAACTGCA 51627 Query 110746 ATGGATCCCTTAC---GACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACC 110802 | || ||||| | | || | || | ||||| | ||||| |||| || ||| Sbjct 51626 AAAGACCCCTTTCTCTTTCCTCCTCCTTGATCCACATACCTAGCTGTATCATTAAATACC 51567 Query 110803 CTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTG 110862 || ||||| || | | |||| |||| |||||||| || ||||| || || | Sbjct 51566 CTAAGCATTGGTACTAGCCCATTGGATATTCCATTTGTTCCTCTAATATATGAATTTTGT 51507 Query 110863 GCACGAATGTCGTGGATATGC-ATACCAATACCACCCGCCCACTTACTAATTTGTGCACA 110921 | | ||| || || | ||| | || || ||||| || ||| |||||| ||||| Sbjct 51506 CCTCTAATATCTTGTA-CTGCTACTCCTATCCCACCAGCTGTCTTGCTAATTAACGCACA 51448 Query 110922 CTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCA 110981 | | ||||| || | ||||| |||||||| || | || || | ||||| || Sbjct 51447 TTGCTTTAGTGTTTCAAATATACCTTCAATCGAGTCAGATTTCATGCAGAGGAGAAAACA 51388 Query 110982 AGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAA 111041 |||||||| || || | ||||| || | |||||| | |||||||| ||||| |||| Sbjct 51387 GGAAGACATTTGTGGCCTGGGCGTACCAGAATTGAACAAGGTAGGTGTAGCATGTGTGAA 51328 Query 111042 CAGAC-CTTGGGACATCTTGTTGTATGTGTCGAGTGCGGAGGGTACATCTTTACCGTGAA 111100 | || ||| |||||| | |||||| || | ||| | ||| | ||| | Sbjct 51327 -ATACTTTTGTGACATCAAATGGTATGTCTCTAATGCCTTTTCCAAATCACCAATGTGGA 51269 Query 111101 TACCAATGGCAACTCGCATGAACATATATTGAGGCGTTTCGATTAGCTTTCCATCAACAC 111160 | ||||| | |||| ||| | || || ||| || || |||| ||||||| || || Sbjct 51268 TCCCAATCGATACTCTCATCAGCAGATGTTGTGGTCGCTCAATTATTTTTCCATTAATAC 51209 Query 111161 GCTGAAGGTAACTCTTCTCTAGGGTCTTGAGACCAAAGTATCCAAAATCGAAATCACG 111218 | | ||||| | | |||| ||||||| ||||| || || | | ||||| || Sbjct 51208 GAAGGAGGTATGACCTTTCTAAAGTCTTGAATCCAAAATAGTCATAGTTAAAATCTCG 51151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588974174174400