Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20fragile_20[genbank_20GCA_5F000956335.1_202015-03-20] 248 sequences; 25,914,542 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq11 158 1e-33 >seq11 Length=477202 Score = 158 bits (174), Expect = 1e-33 Identities = 841/1331 (63%), Gaps = 22/1331 (2%) Strand=Plus/Minus Query 105934 ATAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 105993 ||| || || | ||||| || ||||| ||||||| || |||| ||| |||| ||||| Sbjct 52617 ATAAATATTACTTGTGTATGGCTCAAAAGATTCATTGTTGCCCAGGATCTGTGACGTGGA 52558 Query 105994 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTC 106053 || || |||||||| || | ||| ||| || | | || | || ||| || || | Sbjct 52557 AGCAGTAGGCATTGGAGCAAGCAAGAGAGAATTCCTCAATCCGTGTTTCTTTATTTGTGC 52498 Query 106054 CTTGAGAACATCCCAGTCGTAGTTGAGCTTGGTTTC-ACCTTC-----CCACATATCAAA 106107 |||||| ||||||||| | | ||| | || |||||| |||||| ||||| Sbjct 52497 CTTGAGTTTATCCCAGTCCCAATA---CTTATTATCCACCTTCACATTCCACATGTCAAA 52441 Query 106108 TTGAAGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTC 106167 |||||| | |||||| | ||| || | | || ||||| | || | ||| Sbjct 52440 TTGAAGAATTCCTTGGCTAGCTGGACTTCCAGGATACGTTTCATAAGGTCCATACACTTG 52381 Query 106168 AGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATT 106227 |||||||| | | |||| | || | |||||||||||| || || | ||| Sbjct 52380 TGCCAATTCCATGGACATTTCCAATGCAGCATAATACATGGTTTCGAAAATTCTTTTATT 52321 Query 106228 CATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAG 106287 | || || || || || ||| ||| || | | | ||||| ||||| | Sbjct 52320 TAATTCTTTTGCAGAGTCAGATTCATATGGATATCTGAGTAGCATAAAGGTGTCCGCCAA 52261 Query 106288 ACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAAC 106347 || || || || | || || |||||||||| | |||| ||| | || || || Sbjct 52260 CCCCTGTACTCCTATCCCTATGGGTCTGTGTCTCTTATTGGACCTCTCAGCTTCCTTCAC 52201 Query 106348 GGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTC 106407 || || |||||| || || | | | | || ||| |||| ||| || || ||||| Sbjct 52200 AGGGTAGTAATTTCGTTCGATTATTTGATCTAAATTACGAGTAATAATTTTGGTAATTTC 52141 Query 106408 ATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGA-AGGGCGA 106466 | ||| || | | ||| || | | || |||| ||| | |||| | | ||||| Sbjct 52140 GTAAAGCTTGTTAAAATTGAATTCTCTTTTTTCCACATTTACA-AATTTGCACAAGGCGA 52082 Query 106467 TTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTAC 106526 | || |||||||| || |||||| ||||| | ||| || || | ||| || || Sbjct 52081 TGGAAGCCAAATTACACACAGCCACTTCATCAGGAGATGTATATTCAATAATCTCACAAC 52022 Query 106527 ACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCAT 106586 ||||||| || || || || |||| |||||| || || || || || | || Sbjct 52021 ACAAGTTACTACATTTGATGGTACCCAGATTCTTCTGATTCGATTTAGCATTACAAGAAT 51962 Query 106587 CCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTT--GAGAATTGCCTTCCA 106644 |||| || | |||||| || || || || | | |||||| | ||| || ||| Sbjct 51961 CCTTATACAACATGTAAGGAACACCAGTTTC--TATTTGACTTTGTAAAATGGCAAACCA 51904 Query 106645 CACATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAG 106704 | ||| || | || | || || || | || || ||| |||||| Sbjct 51903 TAAATCTTGTGCCAGCACCGTTTTTTTCCCCATATTTTCTTCTTCATATTTTAAGTAGAG 51844 Query 106705 GGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAG 106764 ||| || || || ||| | || | ||||| | | ||| || | || Sbjct 51843 TTTTTCGAATTCTTCTCCCCATGACTCACTTAACCCTGGACATTCATTTGGGCACATGAG 51784 Query 106765 AGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGA 106824 || ||| | | |||| || | |||||| || | ||| || | ||||| | | Sbjct 51783 AGTCCAATTTTGATTTTCCTTCACTCTCTTCATAAACAAGTCAGGTACCCACACAGCATA 51724 Query 106825 AAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTC 106884 ||| ||||||| | ||| ||||| | ||| || || || ||| || | || || Sbjct 51723 AAAAAGATCTCGAGCTCGAAGTTCTTCCTTACCATGATTTTTTCTTAAATCTAAAAATTC 51664 Query 106885 CATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTC---GACGCCC 106941 | || || | |||||||| |||| ||| ||||| | ||| ||||||| | || Sbjct 51663 AAAAATGTCTGAATGCCATGGTTCAATATAAACTGCAAAAGACCCCTTTCTCTTTCCTCC 51604 Query 106942 AGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATC 107001 |||||| ||||| | ||||| | |||||||| | ||||||||| | | |||| Sbjct 51603 TCCTTGATCCACATACCTAGCTGTATCATTAAATACCCTAAGCATTGGTACTAGCCCATT 51544 Query 107002 TGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGC-A 107060 ||| |||||||| || | |||| || || | |||| | ||| || | ||| | Sbjct 51543 GGATATTCCATTTGTTCCTCTAATATATGAATTTTGTCCTCTAATATCTTGTA-CTGCTA 51485 Query 107061 TCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATAC 107120 || || || ||||| ||| ||| |||||| | | | || ||| || | |||| Sbjct 51484 CTCCTATCCCACCAGCTGTCTTGCTAATTAACGCACATTGCTTTAGTGTTTCAAATATAC 51425 Query 107121 CGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTG 107180 | | || ||||| || || || || || || ||||| || || || || | Sbjct 51424 CTTCAATCGAGTCAGATTTCATGCAGAGGAGAAAACAGGAAGACATTTGTGGCCTGGGCG 51365 Query 107181 TACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATAC-CTTGGGACATCTTGTCG 107239 |||||| |||||| | ||| ||||| || || |||| |||| ||| |||||| | | Sbjct 51364 TACCAGAATTGAACAAGGTAGGTGTAGCATGTGTGAA-ATACTTTTGTGACATCAAATGG 51306 Query 107240 TATGTCTCCAA 107250 |||||||| || Sbjct 51305 TATGTCTCTAA 51295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589978971059520