Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20fragile_20[genbank_20GCA_5F000956335.1_202015-03-20] 248 sequences; 25,914,542 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq11 181 1e-40 seq16 161 1e-34 >seq11 Length=477202 Score = 181 bits (200), Expect = 1e-40 Identities = 934/1478 (63%), Gaps = 63/1478 (4%) Strand=Plus/Minus Query 47357 ATATATATTACTTGTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGA 47416 ||| ||||||||||| ||||| || | ||||||||| || || | || || | || || Sbjct 52617 ATAAATATTACTTGTGTATGGCTCAAAAGATTCATTGTTGCCCAGGATCTGTGACGTGGA 52558 Query 47417 TGCTGTAGGCATGGATGCAACTAATAAGCTATTTCTTACTCCATATTTTTGTATCTNNNN 47476 || |||||||| | |||| || | ||| || | ||| | ||| | ||| | Sbjct 52557 AGCAGTAGGCATTGGAGCAAGCAAGAGAGAATTCCTCAATCCGTGTTTCTTTATTTGTGC 52498 Query 47477 NNNNNNNNGTTTCCAATCCCAA-AGATCTGATGGAACA--ACATTCCAAAAATCATATTG 47533 | ||| |||||| | | | || | | |||||||| | ||| |||| Sbjct 52497 CTTGAGTTTATCCCAGTCCCAATACTTATTATCCACCTTCACATTCCACATGTCAAATTG 52438 Query 47534 AAGAATTCCTTTACTTATCGGAGAACCATTATATGTTTTATAAGGACCGTATAGTTTAGC 47593 ||||||||||| || ||| ||| ||| |||| |||||| || || | || || Sbjct 52437 AAGAATTCCTTGGCTAGCTGGACTTCCAGGATACGTTTCATAAGGTCCATACACTTGTGC 52378 Query 47594 GAGTTCACA---ACTTGCTTCCAATGCACTATAATATATTGTTTCAAATATTTTTATGTT 47650 | ||| || || | |||||||||| |||||| || ||||| || ||| || | || Sbjct 52377 CAATTC-CATGGACAT--TTCCAATGCAGCATAATACATGGTTTCGAAAATTCTTTTATT 52321 Query 47651 TAGATTCCTTGCTTCTGAT---GATTCAAAAGGATANNNNNNNNNNNNNAATGTATCTGC 47707 || |||| || | | || |||||| | ||||| || || || || Sbjct 52320 TA-ATTCTTT--TGCAGAGTCAGATTCATATGGATATCTGAGTAGCATAAAGGTGTCCGC 52264 Query 47708 CAATCCTTGAACACCAATACCAATTGGTCTATGAGTTTTATTAGAAAACTCAGCTTCTGG 47767 ||| || || || || || || || ||||| || | ||||| || ||||||||| Sbjct 52263 CAACCCCTGTACTCCTATCCCTATGGGTCTGTGTCTCTTATTGGACCTCTCAGCTTCCTT 52204 Query 47768 TAATGGATATTTGTTTATATCTATAATTTTATTTAGANNNNNNNNNNNNNNNNNNACAAT 47827 | || || | ||| || || |||| || || | ||| Sbjct 52203 CACAGGGTAGTAATTTCGTTCGATTATTTGATCTAAATTACGAGTAATAATTTTGGTAAT 52144 Query 47828 TTCTCTTAATTTATTAAAATCAAACT-TGTTATTTATA-----ACAAACCTATTAAGTGC 47881 ||| | || ||||||| || | | || ||| | ||||| | | || Sbjct 52143 TTCGTAAAGCTTGTTAAAATTGAATTCTCTTTTTTCCACATTTACAAATTTGCACAAGGC 52084 Query 47882 TATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATTTCAGC 47941 || || || | |||||| ||||| || |||| ||| ||||||| || || ||| Sbjct 52083 GATGGAAGCCAAATTACACACAGCCACTTCATCAGGAGATGTATATTCAATAATCTCACA 52024 Query 47942 ACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATT--ATTNNNNTTGTTACAT 47999 ||| | |||| ||||||||| ||||||| ||| | ||||| ||| | |||| Sbjct 52023 ACACAAGTTACTACATTTGATGGTACCCAGATTCTTCTGATTCGATTTAGCAT--TACAA 51966 Query 48000 GCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTC 48059 | ||||| || | ||| |||| ||||||||||| ||| || | || | | Sbjct 51965 GAATCCTTATACAACATGTAAGGAACACCAGTTTCTATTTGACTTTGTAAAATGGCAAAC 51906 Query 48060 CAAACA----GTCCTAGC--CTTTATAACAGCTCTAGCTTTATTATCATGTTCGTATTTA 48113 || | | || | ||| | || | | | | |||| || | ||| ||||| Sbjct 51905 CATAAATCTTGTGCCAGCACCGTTTT------TTTCCCCATATTTTCTTCTTCATATTTT 51852 Query 48114 GTATATAACTTCTCAAATTCATC--CCCAT-ACACATTATCTAACCCAGGACATTCATTA 48170 || | || || ||||| || ||||| || || | |||||| ||||||||||| Sbjct 51851 AAGTAGAGTTTTTCGAATTCTTCTCCCCATGACTCACT---TAACCCTGGACATTCATTT 51795 Query 48171 GGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATC 48230 || ||||| | | ||||| | || | || ||||| ||||||| | || |||| | Sbjct 51794 GGGCACATGAGAGTCCAATTTTGATTTTCCTTCACTCTCTTCATAAACAAGTCAGGTACC 51735 Query 48231 CAAAGAGCTATAAATAA-ATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAG 48289 || | ||| ||||| || ||| | || || |||||||| || ||| ||| || | | Sbjct 51734 CACACAGC-ATAAAAAAGATCTCGAGCTCGAAGTTCTTCCTTACCATGATTTTTTCTTAA 51676 Query 48290 TTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGC-CATTACACCTG 48348 || | ||| || | || || | |||||||||||| | ||| | ||| | || ||| Sbjct 51675 ATCTAAAAATTCAAAAATGTCTGAATGCCATGGTTCAATATAAACTGCAAAAGACCCCT- 51617 Query 48349 GTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTG 48408 || || ||||||||||| | ||| || || |||| ||| | || || | ||||| Sbjct 51616 TTCTCTTTCCTCCTCCTTGATCCACATACCTAGCTGTATCATTAAATACCCTAAGCATTG 51557 Query 48409 GGACAATACCATTTGATATACCATTGGTTCC-CGAA-ATATAACT----TCCACT-AGCT 48461 | || | ||||| ||||| ||||| ||||| | || |||| | | ||| || | | Sbjct 51556 GTACTAGCCCATTGGATATTCCATTTGTTCCTCTAATATATGAATTTTGTCCTCTAATAT 51497 Query 48462 CTTATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGT 48521 ||| || | ||| | ||||| ||||| || | || |||| ||||| | Sbjct 51496 CTTGTACTGCTACT-------CCTATCCCACCAGCTGTCTTGCTAATTAACGCACATTGC 51444 Query 48522 TTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTA 48581 || || || ||| | || ||||| || ||| | |||| | |||||||| | Sbjct 51443 TTTAGTGTTTCAAATATACCTTCAATCGAGTCAGATTTCATGCAGAGGAGAAAACAGGAA 51384 Query 48582 GACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCAT 48641 |||||||| || || || ||||| || || || || | ||||| | || | Sbjct 51383 GACATTTGTGGCCTGGGCGTACCAGAATTGAACAAGGTAGGTGTAGCATGTGTGAAATAC 51324 Query 48642 TTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATC-CCATTGATGTATACC 48700 || | ||| | ||| | ||||| || | | || | ||| ||| || || || || Sbjct 51323 TTTTGTGACATCAAATGGTATGTCTCTAATGCCTTTTCCAAATCACCAATG-TGGATCCC 51265 Query 48701 TATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAA 48760 || ||||| | ||| | || || ||| |||| |||| ||||| ||| || | Sbjct 51264 AATCGATACTCTCATCAGCAGATGTTGTGGTCGCTCAATTATTTTTCCATTAATACGAAG 51205 Query 48761 AAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGT 48798 || ||||| |||| || || || || |||||||||| Sbjct 51204 GAGGTATGACCTTTCTAAAGTCTTGAATCCAAAATAGT 51167 >seq16 Length=409614 Score = 161 bits (178), Expect = 1e-34 Identities = 255/363 (70%), Gaps = 2/363 (1%) Strand=Plus/Minus Query 19141 ATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTA 19200 |||||||| |||||| || || || || ||| ||| || | || |||| || | Sbjct 247891 ATCCATTTGGCTGCCCACAACGCTTTGTTCTTCACAGCTGGAATATTTTCAATAGCATGA 247832 Query 19201 AATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATT 19260 || | || ||| | ||| | || || | || || || ||||| |||||| | Sbjct 247831 AACAAATTCATTCTCTCCTTCTCGTCCTTTATGTAGTTGTCAATTAATAAGCTGTACGTC 247772 Query 19261 TCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATC 19320 || || ||||||||||| | || || || || |||||| ||||||| ||||| Sbjct 247771 TCCGAGTGAATATTTTCAACTGCTATTTGGAAGGAGTAAAATTTCTTTGCTTCCGTTATT 247712 Query 19321 TGTACTTCACTACAAAATCTT-TCGACCAAATTTTCATTAACTATTCCATCACTAGCTGC 19379 || |||| | ||||| | ||| | |||||||| || ||||||||||| ||||| Sbjct 247711 TGCACTTGGCGTAAAAATTTGCTCG-CTAAATTTTCCAATACAATTCCATCACTGGCTGC 247653 Query 19380 AAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCCAATC 19439 |||||| || || ||||||||||||||||||||||||| | ||||| | | |||| Sbjct 247652 AAAAAAAGCCAACACATGTTTAATAAAATGTTTTTCATTTTCATTTAATTTTTCGAAATC 247593 Query 19440 ATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTT 19499 || | ||| |||| || || | ||| ||| ||||||| || || || || |||||||| Sbjct 247592 TTTTAAATCGCTAGACAAGTCAATTTCCTCAGCTGTCCAGAAGGACGCTTCCGCTTTTTT 247533 Query 19500 ATA 19502 ||| Sbjct 247532 ATA 247530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562107057462720