Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20fragile_20[genbank_20GCA_5F000956335.1_202015-03-20] 248 sequences; 25,914,542 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq6 244 9e-59 seq15 201 9e-46 seq1 104 2e-16 seq45 96.9 3e-14 seq36 91.5 1e-12 >seq6 Length=557456 Score = 244 bits (270), Expect = 9e-59 Identities = 596/888 (67%), Gaps = 19/888 (2%) Strand=Plus/Minus Query 551727 GGAACTCATGACGTAACTCTTCTATCTCTCGAAGATGGTCTCTTTTCTGTATTAGCTACT 551786 |||||| ||| ||| |||| || || | ||||||||| | ||| ||| ||||| Sbjct 521321 GGAACTTTTGATGTATCTCTCTTAACTATTGAAGATGGTATTTTTGAAGTAAAGGCTACA 521262 Query 551787 AGTGGAGATTCTCATCTTGGTGGCGAAGATTTTGATAATAGACTGGTATCATGGTGTGTT 551846 |||||| | || | || || |||||||||||||| ||| |||| | |||||| Sbjct 521261 GCTGGAGACACGCACTTGGGAGGAGAAGATTTTGATAACAGATTGGTGAACTTTTGTGTT 521202 Query 551847 GAAGATTTTAAACGAAAAAACAAAGTT---GATCTATCTACATCTGCCAAAGCTCTTCGT 551903 ||||| |||||| ||||||| | || ||| |||||| | || |||| | | Sbjct 521201 GAAGACTTTAAAAGAAAAAATAGAGGAAAGGATTTATCTAAGAATAGCAGAGCTTTAAGA 521142 Query 551904 CGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAACCACT 551963 | || ||||| || ||||||||||| || || | || || || ||| |||| Sbjct 521141 AGATTACGAACTCAGTGTGAAAGAGCCAAGCGTACTTTATCCTCCTCCACACAAGCCACC 521082 Query 551964 ATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAA 552023 || ||| | ||||| | ||||| || || || || | | | | || |||| | Sbjct 521081 ATCGAAATTGATTCCCTTTTTGAAGGTATCGACTACAGCGTGACAGTAAGCAGAGCCAGA 521022 Query 552024 TTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAA--CCAGTAGAACAAGTTT 552081 ||||| || | ||| |||| || | | || || || || || || | || | Sbjct 521021 TTTGAGGAACTATGTATTGATTATTTCCGTGACAC--TTTAATTCCTGTTGAGAAGGTGT 520964 Query 552082 TAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTA 552141 | | |||| ||| ||| || || | || || ||| |||| ||||||||||| || | Sbjct 520963 TGAAAGATGCAATGATGGACAAGAAGAGCGTCCACGAAGTTGTCCTTGTTGGTGGTTCCA 520904 Query 552142 CAAGAATTCCTAAAATTCGCGAAATG-TTAAGTTCTTATTTCAATGGTAAAAAA--TTAA 552198 |||||||||| ||||||| | | ||||| || ||| ||||| || || || Sbjct 520903 CAAGAATTCCCAAAATTCAAACACTCATTAAGGAGTTCTTT-AATGGAAAGGAAGCTTGC 520845 Query 552199 ATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTC 552258 | || | | || || ||||| || ||||| |||||||| || | |||||||| ||| Sbjct 520844 A-GATCGA-TCAACCCTGATGAAGCCGTTGCTTATGGTGCAGCCGTACAAGCAGCCATTT 520787 Query 552259 TTTCTGGACAAACTGATGAAAAACTACAAAATA-TTGTA-CTTGTAGATGT-TACTCCTC 552315 | ||||| | | || || || || | |||| || ||||||| | |||| Sbjct 520786 TATCTGGTGA--CCAATCCAATGCTGTGCAAGACTTGTTGCTATTAGATGTGTGTTCCT- 520730 Query 552316 TATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTA 552375 ||||||| ||| | ||||| | |||||| | ||||| || || || || |||||||| | Sbjct 520729 TATCTCTCGGTCTCGAAACCGCAGGAGGTGTCATGACCAAGCTGATTGAGAGAAATACCA 520670 Query 552376 CTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTA 552435 | || || || ||| || | ||| | || ||| | ||||| ||| | | || Sbjct 520669 CCATCCCAGCAAAGAAAAGTCAAATCTTTACCACTTATGCTGATAACCAACCAGGAGTGT 520610 Query 552436 CAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTT 552495 || ||| | | ||||||||||||| | ||||| |||||||| | | |||| | Sbjct 520609 TGATCCAAGTGTATGAAGGAGAAAGAGCCCTAACTAAGGATAATAACTTATTGGGTAAAT 520550 Query 552496 TTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCG 552555 || | ||||| ||||| || || ||||| | |||||| |||||||| || ||||| | Sbjct 520549 TTCACTTAGACGGTATCCCACCAGCTCCAAGAAAAGTACCACAAATTGAGGTCACTTTTG 520490 Query 552556 ATATCGATGCCAATGGAATTTTGAATGTGACTGCTTGTGATAAATCTA 552603 | || ||||| ||||| || | || || |||||| ||| ||||||| Sbjct 520489 ACATTGATGCTAATGGTATCCTTAACGTCACTGCTGTTGAAAAATCTA 520442 Score = 183 bits (202), Expect = 2e-40 Identities = 376/552 (68%), Gaps = 23/552 (4%) Strand=Plus/Minus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 || || ||||| || | || |||||||| || || || || ||| ||||| || Sbjct 521915 GCCATCGGTATTGACCTTGGTACCACATACTCCTGCGTCGGGGTATGGAGAAATGAAAAT 521856 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 || || || ||||||||||| || || |||||||| |||||||| |||||| | ||||| Sbjct 521855 GTAGATATCATTGCCAATGACCAGGGAAACAGAACCACTCCATCCTATGTTGCCTTCACT 521796 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171 || || || || | || ||||| || || | |||| | | || || || Sbjct 521795 GACACAGAGAGACTAATCGGAGATGCCGCTAAGAACCAAGTGGCAAGGAACCCCGAAAAC 521736 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231 ||| |||||||||| || | ||||||||||| | || | ||| || |||| ||| Sbjct 521735 ACTGTTTTTGATGCGAAGAGATTAATTGGAAGGAAGTTCACTGAATCATCTGTCCAGAGT 521676 Query 550232 GATATGAAGCATTGGCCTTT-----CCAAAT----TGTTAATGTTTCTGGAAAACCTTAT 550282 ||||||||||| ||||| || ||||| |||| ||| ||| || | Sbjct 521675 GATATGAAGCACTGGCCCTTTACGGTCAAATCCGGTGTTGATG-----AGAAGCCCAT-G 521622 Query 550283 ATTGAAG-CTACTCATGAAGGATCTGTTAAACAAT--TTTCA-CCAGAACAAATTTCATC 550338 ||||| | | || || ||||| | || ||| ||||| |||||| |||| || || Sbjct 521621 ATTGAGGTATGCT-ATCAAGGA---GAGAAGAAATTATTTCACCCAGAAGAAATCTCTTC 521566 Query 550339 TATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGA 550398 |||||||| || |||||| ||| || || ||| | || | ||| | Sbjct 521565 CATGGTTTTGCAAAAGATGAAAGAAAATGCAGAAGCGTTTTTAGGAAAGTCCATTAAAAA 521506 Query 550399 TGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGC 550458 |||||| || || || ||||| ||||||||||| |||||| | ||||| || || ||||| Sbjct 521505 TGCAGTCATCACCGTGCCAGCTTATTTTAATGATTCACAAAGACAAGCCACCAAGGATGC 521446 Query 550459 TGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACT 550518 || |||||||| | ||||| | | ||||| ||||| || ||||||||||| | Sbjct 521445 AGGTACCATTGCTGGTTTGAATGTCATGAGAATTATTAATGAGCCAACTGCTGCTGCTAT 521386 Query 550519 TGCATATGGACT 550530 ||| || || || Sbjct 521385 TGCTTACGGTCT 521374 >seq15 Length=432089 Score = 201 bits (222), Expect = 9e-46 Identities = 372/542 (69%), Gaps = 13/542 (2%) Strand=Plus/Minus Query 552015 AGGGCCAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAA 552074 || || || |||||||| | | |||| | |||||| ||||| | ||||| ||| || Sbjct 215807 AGAGCTAAGTTTGAAGAATTGAATGATGATTTATTTAGAGAAACATTAGAACCCGTA-AA 215749 Query 552075 CAAGTTTTAAGA-GATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGG 552133 ||| | ||| ||| |||| ||| || |||| || |||| || || ||||| || Sbjct 215748 GAAGGTACTAGATGATGCAAAATATGAAAAGAGCAAAATAGATGAGATCGTTCTTGTAGG 215689 Query 552134 TGGATCTACAAGAATTCCTAAAATTCGCGAAATGTTAAGTTCTTATTTCAATGGTAAAAA 552193 |||||||| | || || ||||||| |||| ||| | ||| |||||||| | Sbjct 215688 AGGATCTACTCGTATACCAAAAATTCAACAAATTATAAAAGAATTTTTTAATGGTAAGGA 215629 Query 552194 ATTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGC 552253 | ||| | || | || |||||||| |||||||| |||||||| || |||||||| | Sbjct 215628 ACCTAATAGAGGTATCAACCCAGATGAAGCTGTTGCATATGGTGCTGCTATTCAAGCTGG 215569 Query 552254 TATTCTTTCTGGACAAACTGATGAAAAACTACAAAATATTGTACTTG-TAGATGTTACTC 552312 ||| ||| ||| ||| || ||||| || | || |||| |||||||||||| Sbjct 215568 AATTATTTTGGGA---------GAAGAATTACAAGATGTCGT-CTTGCTAGATGTTACTC 215519 Query 552313 CTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATA 552372 | ||| | | || | ||||| ||||||||||| ||||| | || || | ||||||| Sbjct 215518 CACTAACGTTAGGAATTGAAACTGTTGGAGGTATCATGACCCAACTCATTAAAAGAAATA 215459 Query 552373 CTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTG 552432 | || || || ||||| | ||||||||||| ||| |||||| | |||| Sbjct 215458 CAGTCATCCCAACGAAGAAATCACAAACCTTTTCTACGTACCAAGACAATCAACCAGCTG 215399 Query 552433 TTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTA 552492 | ||||||| | |||||||| |||||| ||| || |||||||| | | | || | Sbjct 215398 TGTTAATTCAAGTATTTGAAGGTGAAAGAGCATTAACCAAAGATAACCACCTGTTGGGAA 215339 Query 552493 CTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTT 552552 ||| | | ||| || || || || | | |||||||| |||||||||| || | Sbjct 215338 AATTTGAACTCTCAGGCATCCCACCAGCACAAAGAGGAGTACCAAAAATTGAAGTCACAT 215279 Query 552553 TC 552554 || Sbjct 215278 TC 215277 Score = 187 bits (206), Expect = 2e-41 Identities = 380/555 (68%), Gaps = 26/555 (5%) Strand=Plus/Minus Query 549995 ATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTT 550054 ||||| || || |||||||| ||||| ||||| |||||||||| ||||||||| ||| Sbjct 216677 ATAGGAATTGACTTAGGAACGACATACAGTTGCGTTGGTGTTTTCAAAAATGGTAGAGTC 216618 Query 550055 GAAATTATTGC-CAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGA 550113 || || |||| |||||| || ||| | | ||| ||||| ||||| |||||| ||| Sbjct 216617 GAGAT-ATTGAACAATGAGTTGGGAAACCGTATTACGCCATCGTATGTGTCTTTCGTGGA 216559 Query 550114 AACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATAC 550173 ||| ||| ||||| ||||| |||| ||||||| | |||||| | || Sbjct 216558 TGGAGAAAGGAAAGTGGGTGAGGCAGCTAAATTGGAAGCCACCCTACACCCTACCCAGAC 216499 Query 550174 TATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGA 550233 | | || |||| ||| | ||||| ||||||| ||| | |||| || | || Sbjct 216498 TGTGTTCGATGTGAAAAGATTAATAGGAAGAAAATTTGA-----CGAC----CAAGAAGT 216448 Query 550234 TATGAAGCATTGGCCTTT----CCA-----AATTGTTAATGTTTCTGGAAAACCTTATAT 550284 |||| || || |||| ||| |||||| || ||||| || |||| Sbjct 216447 GGTGAAAGATAGGACTTTATTGCCATATGAAATTGTAAACCAGGAAGGAAAGCCAAATAT 216388 Query 550285 TGAAGCTACTCATGAAGGATCTGTTAAACAATTTT-CACCAGAACAAATTTCATCTATGG 550343 || ||| || ||||| | | | |||| | |||||||||||| |||||| Sbjct 216387 AAGAG-TACAGATAAAGGACAAGAAGACGACTTTTGCCCCAGAACAAATTAGTGCTATGG 216329 Query 550344 TTTTAATGAAAATGAAACAAACAGC-CAGTGCTTTTGTTGGTCAAG-AAGTTACGGATGC 550401 ||||| ||||||||| ||| ||| || | |||| |||| ||| ||||| |||| Sbjct 216328 TTTTAGAAAAAATGAAAGAAATAGCTCAATCCTTT--TTGGGAAAGCCAGTTAAAAATGC 216271 Query 550402 AGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGG 550461 ||| | ||||| ||||| ||||| ||||| | || | ||||| || |||||||| || Sbjct 216270 AGTCGTCACTGTGCCAGCTTATTTCAATGATGCTCAGAGACAAGCAACGAAAGATGCAGG 216211 Query 550462 ACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGC 550521 | |||||||| | || || | |||||||| || ||||| ||||| || || | || Sbjct 216210 AACCATTGCTGGTTTAAACATTGTACGTATTATAAACGAACCCACTGCAGCAGCTTTGGC 216151 Query 550522 ATATGGACTTGATAA 550536 |||||||| || || Sbjct 216150 TTATGGACTGGACAA 216136 >seq1 Length=752713 Score = 104 bits (114), Expect = 2e-16 Identities = 185/270 (69%), Gaps = 0/270 (0%) Strand=Plus/Plus Query 552301 TAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTA 552360 ||||||| | ||| |||||||| ||| ||||||| | || || || | || || | | Sbjct 326802 TAGATGTGATTCCCCTATCTCTAGGTATAGAAACCCTAGGTGGAGTTTTTACCAAATTGA 326861 Query 552361 TCGATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATA 552420 || | ||||| ||||| || || |||||||| | ||||||| || | || | Sbjct 326862 TCAACAGAAACACTACCATCCCGACGAAAAAATCGCAGATATTTTCCACCGCAGCTGACA 326921 Query 552421 ATCAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATA 552480 | ||||| || | || || | || ||||||||||| || | | ||||||| Sbjct 326922 ACCAAACACAGGTGAGTATCAAAGTATTCCAAGGAGAAAGAGAAATGGCATGCGATAATA 326981 Query 552481 ATCAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAA 552540 | | || | ||| |||||| || ||||| ||||| ||| | ||||| ||||||| Sbjct 326982 AAATGTTAGGATCGTTTGATTTAGTGGGAATTCCACCTGCACCTAGAGGAGTCCCGCAAA 327041 Query 552541 TTGAAGTTACTTTCGATATCGATGCCAATG 552570 ||||||| || || ||| | || || |||| Sbjct 327042 TTGAAGTCACCTTTGATGTAGACGCAAATG 327071 >seq45 Length=210479 Score = 96.9 bits (106), Expect = 3e-14 Identities = 79/96 (82%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 563319 ATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTT 563378 |||||| | ||||||||| ||||| |||||||| ||||||||||| |||||||| ||||| Sbjct 198054 ATCTTCCAATTGTTTTCCAGCAAATATAAGTCTCTGCTGATCAGGTGGAATTCCCTCTTT 197995 Query 563379 ATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATC 563414 || |||||||| |||||| |||||||| || Sbjct 197994 GTCCTGAATTTTCGCTTTTACATTTTCAATTGTGTC 197959 >seq36 Length=257049 Score = 91.5 bits (100), Expect = 1e-12 Identities = 143/202 (71%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 390811 ATACCATTATCACCATATACACATTGAATTAATTTGTC-ATTGGCATTTCTTACGGTACC 390869 || |||| || ||||| | | ||||||| ||| | || || || ||||| || || | Sbjct 229513 ATTCCATCCTCTCCATAAAGAAATTGAAT-AATATCTCCATAGGAGTTTCTAACAGTTCG 229571 Query 390870 ATCATACTCTACTTTAATGTCTTCTAACATTTTAACTAATTTTCTTTGGATATAACCAGT 390929 |||||||| || | | ||||| | ||||| |||| | ||||| || ||||| || Sbjct 229572 ATCATACTGCACCATGACATCTTCCATTGCTTTAATTAATCTCCTTTGTATGTAACCCGT 229631 Query 390930 GTCTGCAGTTTTAATTGCAGTATTAATAATACCTTCTCTTCCTGCCATAACTTGGAAGAA 390989 || | || ||| || || | ||| ||||||||||||||| |||| | ||||| || Sbjct 229632 TTCCGACGTCTTACACGCCGTGTCAATGATACCTTCTCTTCCTCCCATGGCATGGAAAAA 229691 Query 390990 AAATTCCATAGGATTGAGTCCA 391011 || |||| || |||||||| Sbjct 229692 AACTTCCTGTGGGGTGAGTCCA 229713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029282884641520