Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20fragile_20[genbank_20GCA_5F000956335.1_202015-03-20] 248 sequences; 25,914,542 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq16 125 8e-24 >seq16 Length=409614 Score = 125 bits (138), Expect = 8e-24 Identities = 182/255 (71%), Gaps = 4/255 (2%) Strand=Plus/Minus Query 37444 TTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCT 37503 |||| || | ||||||| ||| || ||| | || |||||||||||||||| ||||| | Sbjct 247803 TTATGTAGTTGTCAATTAATAAGCTGTACGTCTCCGAGTGAATATTTTCAACTGCTATTT 247744 Query 37504 GAAAACCATAAAAACACCTAGCTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTA 37563 | || ||||| | | ||||| | || ||| || | | ||||| | | |||| Sbjct 247743 GGAAGGAGTAAAATTTCTTTGCTTCCGTTATTTGCACTTGGCGTAAAAATTTGCTCGCTA 247684 Query 37564 AGTTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAAT 37623 | ||||| || || |||||||| |||||||| ||||| | |||| ||| ||||||| Sbjct 247683 AATTTTCCAATACAATTCCATCACTGGCTGCAAAAAAAGCCAACACATGTTTAATAAAAT 247624 Query 37624 GTCTTTCATCATTTGA--TAATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTC 37681 || |||||| ||| | |||||||| |||| || | ||| | || || |||| ||| Sbjct 247623 GTTTTTCAT--TTTCATTTAATTTTTCGAAATCTTTTAAATCGCTAGACAAGTCAATTTC 247566 Query 37682 ATCAACGGTCCAAAA 37696 ||| | ||||| || Sbjct 247565 CTCAGCTGTCCAGAA 247551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592314963817920