Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20fragile_20[genbank_20GCA_5F000956335.1_202015-03-20] 248 sequences; 25,914,542 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq6 268 6e-66 seq15 203 2e-46 seq1 127 1e-23 seq36 104 2e-16 >seq6 Length=557456 Score = 268 bits (296), Expect = 6e-66 Identities = 650/966 (67%), Gaps = 29/966 (3%) Strand=Plus/Minus Query 475310 GGAACTCATGACGTAACTTTACTATCACTCGAAGATGGTCTTTTCTCTGTAAGAGCAACA 475369 |||||| ||| ||| || | || | | ||||||||| |||| |||| || ||| Sbjct 521321 GGAACTTTTGATGTATCTCTCTTAACTATTGAAGATGGTATTTTTGAAGTAAAGGCTACA 521262 Query 475370 GCTGGAGATTCACATCTTGGTGGTGAAGATTTTGATAATAGACTTGTATCATGGTGTGTT 475429 |||||||| | || | || || |||||||||||||| ||| | || | |||||| Sbjct 521261 GCTGGAGACACGCACTTGGGAGGAGAAGATTTTGATAACAGATTGGTGAACTTTTGTGTT 521202 Query 475430 GAAGATTTCAAGAGGAAAAATAAAG---TTGATCTTTC-AACATCTGCTAAAGCATTAAG 475485 ||||| || || || ||||||| || ||| | || || | || | ||| ||||| Sbjct 521201 GAAGACTTTAAAAGAAAAAATAGAGGAAAGGATTTATCTAAGAATAGC-AGAGCTTTAAG 521143 Query 475486 ACGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTAC 475545 | | | ||||| |||||| | || ||||| || | || || | || ||| | || Sbjct 521142 AAGATTACGAACTCAGTGTGAAAGAGCCAAGCGTACTTTATCCTCCTCCACACAAGCCAC 521083 Query 475546 TGTTGAAGTTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTAA 475605 | ||| ||||||| ||||||||||| || || || | | | || || | Sbjct 521082 CATCGAAATTGATTCCCTTTTTGAAGGTATCGACTACAGCGTGACAGTAAGCAGAGCCAG 521023 Query 475606 ATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAA--CCCGTTGAACAAGTT 475663 |||||| || | ||| |||| | ||| ||| || || || ||||| | || Sbjct 521022 ATTTGAGGAACTATGTATTGAT-TATTT-CCGTGACACTTTAATTCCTGTTGAGAAGGTG 520965 Query 475664 CTCAGAGATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCA 475723 | | |||| | | | ||||| ||||| ||| |||| ||||| || ||||| Sbjct 520964 TTGAAAGATGCAATGATGGACAAGAAGAGCGTCCACGAAGTTGTCCTTGTTGGTGGTTCC 520905 Query 475724 ACAAGAATTCCAAAAATAAGAGAAATGCTTTCATCA-TATTTTAATGGTAA-AAAGTTAA 475781 ||||||||||| ||||| | | | | || | | | |||||||| || ||| | Sbjct 520904 ACAAGAATTCCCAAAAT-TCAAACACTCATTAAGGAGTTCTTTAATGGAAAGGAAGCTTG 520846 Query 475782 ATGAAAGTGTAAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTT 475841 || | | || ||||||||||| ||||| ||||| || || || |||||||| |||| Sbjct 520845 CAGATCG-ATCAACCCTGATGAAGCCGTTGCTTATGGTGCAGCCGTACAAGCAGCCATTT 520787 Query 475842 TATCAGGT---CAATCAGACGAGAAACTAAATAATA-TTG-TACTTGTTGACGTAACTCC 475896 |||| ||| ||||| | | || || | ||| | || | || || | | Sbjct 520786 TATCTGGTGACCAATCCAATG-----CTGTGCAAGACTTGTTGCTATTAGATGTGTGTTC 520732 Query 475897 ACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATAC 475956 | || | ||||| ||||| | ||||| | ||||| || || ||||| |||||||| Sbjct 520731 CTTATCTCTCGGTCTCGAAACCGCAGGAGGTGTCATGACCAAGCTGATTGAGAGAAATAC 520672 Query 475957 TCCTATCCCATGCA---AAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAAC 476013 | |||||| ||| |||| ||||| | ||| |||||||| ||||||| ||| || Sbjct 520671 CACCATCCCA-GCAAAGAAAAGTCAAA--TCTTTACCACTTATGCTGATAACCAACCAGG 520615 Query 476014 TGTAACCATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGG 476073 || |||||| | | |||||| |||||| | ||||| ||||||||| | | || Sbjct 520614 AGTGTTGATCCAAGTGTATGAAGGAGAAAGAGCCCTAACTAAGGATAATAACTTATTGGG 520555 Query 476074 AACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTAC 476133 | ||| | | || ||||| || || ||||| ||| ||| || |||||||| || || Sbjct 520554 TAAATTTCACTTAGACGGTATCCCACCAGCTCCAAGAAAAGTACCACAAATTGAGGTCAC 520495 Query 476134 TTTTGATATTGATGCAAATGGTATTCTTAATGTTACTGCTTGTGATAAATCTAGTAACAA 476193 |||||| |||||||| |||||||| ||||| || |||||| ||| ||||||| ||| Sbjct 520494 TTTTGACATTGATGCTAATGGTATCCTTAACGTCACTGCTGTTGAAAAATCTACAGGCAA 520435 Query 476194 GAGTAAAAATATAACTATTACAAACAATCGTGGTAGATTTACTGAAGAACAAATTCAACG 476253 || |||| || ||||| || || || ||||| || |||| ||||| | || Sbjct 520434 ACAGAATCATATCACCATTACCAATGATAAGGGAAGATTGTCTCCAGAAGAAATTGATCG 520375 Query 476254 TATGGT 476259 |||||| Sbjct 520374 TATGGT 520369 Score = 205 bits (226), Expect = 6e-47 Identities = 384/552 (70%), Gaps = 17/552 (3%) Strand=Plus/Minus Query 474326 ATTGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGT 474385 || || || |||||||| | || || || ||| || || | || ||| ||||| Sbjct 521918 ATCGCCATCGGTATTGACCTTGGTACCACATACTCCTGCGTCGGGGTATGGAGAAATGAA 521859 Query 474386 AAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTT 474445 || ||||| || |||||||||||||| || || ||||| || ||||| |||||| | || Sbjct 521858 AATGTAGATATCATTGCCAATGACCAGGGAAACAGAACCACTCCATCCTATGTTGCCTTC 521799 Query 474446 ACTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTT 474505 ||||| || || || || |||||||| ||||| | |||| ||| || || | Sbjct 521798 ACTGACACAGAGAGACTAATCGGAGATGCCGCTAAGAACCAAGTGGCAAGGAACCCCGAA 521739 Query 474506 AATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAA 474565 || ||| |||||||||| || ||||| ||||| | || || ||| | ||||||| Sbjct 521738 AACACTGTTTTTGATGCGAAGAGATTAATTGGAAGGAAGTTCACTGAATCATCTGTCCAG 521679 Query 474566 TCTGATATGCGTCATTGGCCTTTTAAGGTGATA---AATGTTGGTG-GTAAACCAT-ATA 474620 ||||||| || ||||| |||| ||| | | ||||| || | | |||| || Sbjct 521678 AGTGATATGAAGCACTGGCCCTTTACGGTCAAATCCGGTGTTGATGAGAAGCCCATGATT 521619 Query 474621 TAG--AAGCAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAAT 474678 || | || || || ||| || | ||| |||| || ||| |||| ||||| || Sbjct 521618 GAGGTATGCTAT-CA---AGGAGAGAAGAAATTATTTCACCCAGAAGAAATCTCTTCCAT 521563 Query 474679 GGTTTTAGCCAAA-ATGAAACAAACCGCGAGCTCATATCTTGGACAAG--AAGTAACTGA 474735 |||||| || ||| |||||| ||| || | | | | ||| ||| | ||| | Sbjct 521562 GGTTTT-GCAAAAGATGAAAGAAAATGCAGAAGCGTTTTTAGGA-AAGTCCATTAA-AAA 521506 Query 474736 TGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGC 474795 |||||| || || || ||||| |||||||||||||| ||| | ||||| || || ||||| Sbjct 521505 TGCAGTCATCACCGTGCCAGCTTATTTTAATGATTCACAAAGACAAGCCACCAAGGATGC 521446 Query 474796 GGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACT 474855 || | ||||| ||| | ||||| | | ||||||||||| ||||| || || || | Sbjct 521445 AGGTACCATTGCTGGTTTGAATGTCATGAGAATTATTAATGAGCCAACTGCTGCTGCTAT 521386 Query 474856 TGCTTATGGTCT 474867 |||||| ||||| Sbjct 521385 TGCTTACGGTCT 521374 >seq15 Length=432089 Score = 203 bits (224), Expect = 2e-46 Identities = 521/785 (66%), Gaps = 25/785 (3%) Strand=Plus/Minus Query 475595 ACAAGGGCTAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTT 475654 || || ||||| |||||||| | | |||| | |||||| ||||| | |||||||| Sbjct 215810 ACCAGAGCTAAGTTTGAAGAATTGAATGATGATTTATTTAGAGAAACATTAGAACCCGTA 215751 Query 475655 GAACAAGTTCTCAGA-GATTCTAAACTTGACAA-ATCACAAGTCCATGAAATTGTTCTTG 475712 | | || || ||| ||| | ||| ||| || | || || | |||| || ||||||| Sbjct 215750 AAGAAGGTACT-AGATGATGCAAAATATGAAAAGAGCAAAA-TAGATGAGATCGTTCTTG 215693 Query 475713 TAGGAGGTTCAACAAGAATTCCAAAAATAAGAGAAATGCTTTCATCATATTTTAATGGTA 475772 ||||||| || || | || |||||||| | |||| | | || ||||||||||| Sbjct 215692 TAGGAGGATCTACTCGTATACCAAAAATTCAACAAATTATAAAAGAATTTTTTAATGGTA 215633 Query 475773 AAAAGTTAAATGAAAGTGTAAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAG 475832 | | ||| | || | || || |||||||||||||||||||| |||||| | |||| Sbjct 215632 AGGAACCTAATAGAGGTATCAACCCAGATGAAGCTGTTGCATATGGTGCTGCTATTCAAG 215573 Query 475833 CAGCTATTTTATCAGGTCAATCAGACGAGAAACTAAATAATATTGTACTTGTT-GACGTA 475891 | | ||| | | || ||| || | || | || | || |||| | || || Sbjct 215572 CTGGAATTATTTTGGG------AGAAGA---ATTACAAGATGTCGT-CTTGCTAGATGTT 215523 Query 475892 ACTCCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGA 475951 |||||||| | ||||| ||||||| |||||||| || ||||| | || ||| | ||| Sbjct 215522 ACTCCACTAACGTTAGGAATTGAAACTGTTGGAGGTATCATGACCCAACTCATTAAAAGA 215463 Query 475952 AATACTCCTATCCCATGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACA 476011 ||||| |||||| || |||||| || ||||| || || || |||||| || Sbjct 215462 AATACAGTCATCCCAACGAAGAAATCACAAACCTTTTCTACGTACCAAGACAATCAACCA 215403 Query 476012 ACTGTAACCATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTT 476071 |||| || ||| | ||||||||||||||| ||| || |||||||| || | Sbjct 215402 GCTGTGTTAATTCAAGTATTTGAAGGTGAAAGAGCATTAACCAAAGATAACCACCTGTTG 215343 Query 476072 GGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTT 476131 |||| ||| | || ||| || || || || | |||||||| || |||||||||| Sbjct 215342 GGAAAATTTGAACTCTCAGGCATCCCACCAGCACAAAGAGGAGTACCAAAAATTGAAGTC 215283 Query 476132 ACTTTTGATATTGATGCAAATGGTATTCTTAATGTTACTGCTTGTGATAAATCTAGTAAC 476191 || || | ||| ||||||||| || | || || || ||| || Sbjct 215282 ACATTCACAGTAGATAAAAATGGTATCCTCCACGTAGAAGCAGAAGACAAAGGTACGGGA 215223 Query 476192 AAGAGTAAAAATATAACTATTACAAACAATCGTGGTAGATTTACTGAAGAACAAATTCAA 476251 || ||||| |||||| |||||||| || || ||| || | | ||||||||| | Sbjct 215222 AAAAGTAAGGGTATAACAATTACAAATGATAAAGGAAGACTTTCCAAGGAACAAATTGAG 215163 Query 476252 CGTATGGTTGATGAAGCCAAAGAGTTTGAAGAAGCTGATAACAA-----GAGAAAAGCTG 476306 ||| || | || || || | |||| ||| | ||||| || ||||||| Sbjct 215162 AAAATGATTAACGATGCAGAAAAATTTGCAGATGAAGATAAAAATCTCCGAGAAAA---- 215107 Query 476307 CTATTGATGCAAAGAATGAACTTGAAAATTATGTTCATAGTGTAAAACAAGCTGTATCAG 476366 | || ||||| ||| | || || |||||| | || | | | ||| ||||| || Sbjct 215106 -AGTAGAAGCAAAAAATAACCTGGATAATTATTTACAAAATATGAAAGCCACTGTAGAAG 215048 Query 476367 ATCAA 476371 || || Sbjct 215047 ATAAA 215043 >seq1 Length=752713 Score = 127 bits (140), Expect = 1e-23 Identities = 133/175 (76%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 290828 CCATATGTTAATGAAGCTGCTGTTGGTTCATTTATAATTCTTAATACATCAAGACCTGCA 290887 ||| ||| ||| | ||||||||||| || || ||||||| | ||||| | ||||||| Sbjct 326181 CCAAATGCTAAGGCCGCTGCTGTTGGCTCGTTAATAATTCGAAGGACATCCAAACCTGCA 326122 Query 290888 ATTTTTGCCGAATCTAAAGTTGCCTGGCGTTGCGCATCATTAAAATAAGCAGGGACTGTA 290947 |||||| | | |||| || || || | ||| | |||||| || |||||||| ||||| Sbjct 326121 ATTTTTCCTGCATCTTTTGTAGCTTGCCTTTGTGAATCATTGAAGTAAGCAGGTACTGTG 326062 Query 290948 ATAACAGCtttttccactttctttttcaaataattttctgccatttgttttattt 291002 |||||||||| | ||||||| || ||||||||| || || ||| ||| |||| Sbjct 326061 ATAACAGCTTGATGCACTTTCCTTCCCAAATAATTCTCAGCTGTTTCTTTCATTT 326007 Score = 114 bits (126), Expect = 8e-20 Identities = 251/377 (67%), Gaps = 12/377 (3%) Strand=Plus/Plus Query 475787 AGTGTAAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTATCA 475846 ||||| || ||||| ||||| ||||||| || || || |||| | || | ||| | Sbjct 326717 AGTGTGAACCCTGACGAAGCAGTTGCATTAGGTGCAGCCATCCAGGGAGGAGTATTAAAA 326776 Query 475847 GGTCAATCAGACGAGAAACTAAATAATATTGTACTTGTTGACGTAACTCCACTTTCATTA 475906 || ||||| |||| || | | || | || || | ||| || || || Sbjct 326777 GG-----------AGAAA-TAAAAGATTTGTTGCTACTAGATGTGATTCCCCTATCTCTA 326824 Query 475907 GGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTATCCCA 475966 ||| | ||||| | || || || | || || | || ||||||| ||| | ||||| Sbjct 326825 GGTATAGAAACCCTAGGTGGAGTTTTTACCAAATTGATCAACAGAAACACTACCATCCCG 326884 Query 475967 TGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAACCATCCAA 476026 |||||||| | |||||||||| |||| || |||||| || | ||| || Sbjct 326885 ACGAAAAAATCGCAGATATTTTCCACCGCAGCTGACAACCAAACACAGGTGAGTATCAAA 326944 Query 476027 ATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTT 476086 | || |||| |||||| || | | |||||||| | | ||| | ||| || | Sbjct 326945 GTATTCCAAGGAGAAAGAGAAATGGCATGCGATAATAAAATGTTAGGATCGTTTGATTTA 327004 Query 476087 GAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGAT 476146 | || ||||| ||||| || |||||||| || ||||||||||| || |||||| | || Sbjct 327005 GTGGGAATTCCACCTGCACCTAGAGGAGTCCCGCAAATTGAAGTCACCTTTGATGTAGAC 327064 Query 476147 GCAAATGGTATTCTTAA 476163 ||||||| ||| |||| Sbjct 327065 GCAAATGCGATTATTAA 327081 Score = 96.9 bits (106), Expect = 2e-14 Identities = 141/197 (72%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 474680 GTTTTAGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGC 474738 ||||| | ||||||||| |||| || ||| ||| | ||| |||| | | || Sbjct 325997 GTTTTGGAAAAAATGAAAGAAACAGCTGAGAAT-TATTTGGGAAGGAAAGTGCATCAAGC 326055 Query 474739 AGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGG 474798 || || || || || || || || |||||||| ||| | ||||| || |||||||| || Sbjct 326056 TGTTATCACAGTACCTGCTTACTTCAATGATTCACAAAGGCAAGCTACAAAAGATGCAGG 326115 Query 474799 AAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGC 474858 || |||||||||| | |||| | || |||||||| || ||||||||||| || | || Sbjct 326116 AAAAATTGCAGGTTTGGATGTCCTTCGAATTATTAACGAGCCAACAGCAGCGGCCTTAGC 326175 Query 474859 TTATGGTCTTGATAAGA 474875 | ||| | || |||| Sbjct 326176 ATTTGGGTTAGAAAAGA 326192 >seq36 Length=257049 Score = 104 bits (114), Expect = 2e-16 Identities = 136/186 (73%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 318643 ATACCATTATCACCATAAACACATTGAATCAATTTATCATTAGCA-TTTCTTACAGTACC 318701 || |||| || ||||||| | ||||||| ||| | || ||| | ||||| ||||| | Sbjct 229513 ATTCCATCCTCTCCATAAAGAAATTGAAT-AATATCTCCATAGGAGTTTCTAACAGTTCG 229571 Query 318702 ATCATATTCCACTTTAATATCTTCTAGTATTTTAACTAATTTTCTTTGTACATAACCTGT 318761 |||||| | ||| | | |||||| | | ||||| |||| | ||||||| ||||| || Sbjct 229572 ATCATACTGCACCATGACATCTTCCATTGCTTTAATTAATCTCCTTTGTATGTAACCCGT 229631 Query 318762 GTCTGCAGTTTTAATAGCAGTATTAATAATACCTTCTCTTCCTGCCATAACTTGGAAAAA 318821 || | || ||| || || | ||| ||||||||||||||| |||| | |||||||| Sbjct 229632 TTCCGACGTCTTACACGCCGTGTCAATGATACCTTCTCTTCCTCCCATGGCATGGAAAAA 229691 Query 318822 GAATTC 318827 | ||| Sbjct 229692 AACTTC 229697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268168562076704