Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20fragile_20[genbank_20GCA_5F000956335.1_202015-03-20] 248 sequences; 25,914,542 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq11 178 7e-40 >seq11 Length=477202 Score = 178 bits (196), Expect = 7e-40 Identities = 313/450 (70%), Gaps = 6/450 (1%) Strand=Plus/Minus Query 25915 ATTTTGCTCAACTTTCTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCT 25974 ||||| || ||| ||| |||||| || || || | ||||| |||||||| | ||||| Sbjct 51771 ATTTTCCTTCACTCTCTTCATAAACAAGTCAGGTACCCACACAGCATAAAAAAGATCTCG 51712 Query 25975 CGCTCTCATTTCTTCTTTTCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGA 26034 |||| | |||||| || || ||||| ||| ||| |||||| || |||||||| ||||| Sbjct 51711 AGCTCGAAGTTCTTCCTTACCATGATTTTTTCTTAAATCTAAAAATTCAAAAATGTCTGA 51652 Query 26035 GTGCCATGGTTCTAAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTAC 26094 ||||||||||| | ||| | |||||| || ||||| |||||||| |||||||| || Sbjct 51651 ATGCCATGGTTCAATATAAACTGCAAAAGACCCCTTTCTCTTTCCTCCTCCTTGATCCAC 51592 Query 26095 GTATCTTGCAGTTTCATTGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTT 26154 || || || || ||||| || || | | |||||| |||| ||| | || | ||| || Sbjct 51591 ATACCTAGCTGTATCATTAAATACCCTAAGCATTGGTACTAGCCCATTGGATATTCCATT 51532 Query 26155 TGTGCTATGAATCT-TGGATCCTGTCGATCTAATATCGTGAGCATGAATACCGATTCCAC 26213 ||| | ||| | || || |||| ||||||||| || | | || || |||| Sbjct 51531 TGTTCCTCTAATATATGAATTTTGTC-CTCTAATATCTTGTACTGCTACTCCTATCCCAC 51473 Query 26214 CAGCCCATTTTG--AAATAGCTGCACAATCTGAAACTGTATCGAAAATTCCTTTTATGCT 26271 ||| | | ||| || || | ||||| | | ||| || || || |||| || Sbjct 51472 CAG-CTGTCTTGCTAATTAAC-GCACATTGCTTTAGTGTTTCAAATATACCTTCAATCGA 51415 Query 26272 ATCACCTTTCATTCCTAATAAAAAACAAGAAGATAATTGCGAATGAGTTGTTCCTGAATT 26331 ||| |||||| | | | |||||| ||||| | ||| | | || || ||||| Sbjct 51414 GTCAGATTTCATGCAGAGGAGAAAACAGGAAGACATTTGTGGCCTGGGCGTACCAGAATT 51355 Query 26332 AAATAATGTCGGTGTAGCATGAGTATAATA 26361 || || || ||||||||||| || |||| Sbjct 51354 GAACAAGGTAGGTGTAGCATGTGTGAAATA 51325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253039235186600