Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20fragile_20[genbank_20GCA_5F000956335.1_202015-03-20] 248 sequences; 25,914,542 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq80 100 4e-16 >seq80 Length=92234 Score = 100 bits (110), Expect = 4e-16 Identities = 155/215 (72%), Gaps = 10/215 (5%) Strand=Plus/Minus Query 47797 ATAACAAAATCATCAGGTTCTTCTTGTTGAAGCATTAACCACATAGCCTCGACATAATCT 47856 || ||||| |||||||| || || ||||| |||||||| ||||||| ||| ||||| Sbjct 80891 ATGACAAAGTCATCAGGCTCATCCTGTTGTAGCATTAAATACATAGCACGGACGTAATCC 80832 Query 47857 CTGGCATGTCCCCAGTCACG--AAGTGCATCAAGATTTCCTAGATA-TAAACAGTCTTGC 47913 | ||||||||||| || || | || || | || |||| ||| || | |||||| Sbjct 80831 TTTGCATGTCCCCAATCTCGGTAGGTAGAT--ATATCCCCTA-ATATTATAGCGTCTTGT 80775 Query 47914 TTACCTT--CAGAGATTGCTTTTAATGCTCTTGTAATCTTACGAGTTACAAAAGTTTCAC 47971 ||| || || | ||| | || | |||||||| || ||||||||||| ||||| | Sbjct 80774 TTATTTTTGCAAATATT--TGCTACCCCCCTTGTAATTTTCCGAGTTACAAATGTTTCCC 80717 Query 47972 CACGTCTTGGAGATTCATGATTAAAAAGAATACCA 48006 | | ||||| |||||||||||| | ||| ||| Sbjct 80716 CTCTCCTTGGGCTTTCATGATTAAACAAAATCCCA 80682 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665492336967360