Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20fragile_20[genbank_20GCA_5F000956335.1_202015-03-20] 248 sequences; 25,914,542 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq11 161 1e-34 >seq11 Length=477202 Score = 161 bits (178), Expect = 1e-34 Identities = 840/1323 (63%), Gaps = 28/1323 (2%) Strand=Plus/Plus Query 75272 TTGGAGACATACGACAAGATGTCCCAAG-GTATGTTCATTCACGCAACACCAACCCTCTT 75330 || ||||||||| | |||||| ||| |||| |||| || || ||||| ||| | || Sbjct 51295 TTAGAGACATACCATTTGATGTCACAAAAGTAT-TTCACACATGCTACACCTACCTTGTT 51353 Query 75331 CAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 75390 |||| ||||||| || || || || ||||| || || || || || || || Sbjct 51354 CAATTCTGGTACGCCCAGGCCACAAATGTCTTCCTGTTTTCTCCTCTGCATGAAATCTGA 51413 Query 75391 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 75450 ||| || | ||||| | || ||| || | | | |||||| ||| ||| ||||| Sbjct 51414 CTCGATTGAAGGTATATTTGAAACACTAAAGCAATGTGCGTTAATTAGCAAGACAGCTGG 51473 Query 75451 GGGTATTGGGAT-GCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAA 75509 || || || | ||| | || ||| | |||| | || || |||| | || |||| Sbjct 51474 TGGGATAGGAGTAGCAG-TACAAGATATTAGAGGACAAAATTCATATATTAGAGGAACAA 51532 Query 75510 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 75569 |||| ||| |||| | | ||||||||| | |||||||| | ||||| | |||| Sbjct 51533 ATGGAATATCCAATGGGCTAGTACCAATGCTTAGGGTATTTAATGATACAGCTAGGTATG 51592 Query 75570 TAAATCAAGCGGGGCGTC---GCAAGGGGTCCATCGCGGTCTACTTGGAACCATGGCATG 75626 | |||||| || | | |||||||| | || || || | |||||||||||| Sbjct 51593 TGGATCAAGGAGGAGGAAAGAGAAAGGGGTCTTTTGCAGTTTATATTGAACCATGGCATT 51652 Query 75627 CCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTGTA 75686 | || || | || || | || ||| || || || ||| | ||||| ||| | Sbjct 51653 CAGACATTTTTGAATTTTTAGATTTAAGAAAAAATCATGGTAAGGAAGAACTTCGAGCTC 51712 Query 75687 GAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGGTG 75746 ||||||| |||| | ||||| | || ||| | || |||||| | || |||| | Sbjct 51713 GAGATCTTTTTTATGCTGTGTGGGTACCTGACTTGTTTATGAAGAGAGTGAAGGAAAATC 51772 Query 75747 GTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTGGGTGAGG 75806 | ||| |||| | || ||| | | ||||| | || | ||| || | Sbjct 51773 AAAATTGGACTCTCATGTGCCCAAATGAATGTCCAGGGTTAAGTGAGTCATGGGGAGAAG 51832 Query 75807 AGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCGACTGTACCAG 75866 | || ||| |||||| ||| |||||||| || || | || || || | | Sbjct 51833 AATTCGAAAAACTCTACTTAAAATATGAAGAAGAAAATATGGGGAAAAAAACGGTGCTGG 51892 Query 75867 CCGCCGATGTTTGGAAGGCTATTCT-CAAA-TCACAGACGGAGACTGGAACACCATATAT 75924 | ||| | ||| || ||| | |||| ||| | | || ||||| || || || Sbjct 51893 CACAAGATTTATGGTTTGCCATTTTACAAAGTCAAATA--GAAACTGGTGTTCCTTACAT 51950 Query 75925 GCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAG 75984 | | || |||||| ||||||| || || || |||||| |||| || ||||| | Sbjct 51951 GTTGTATAAGGATTCTTGTAATGCTAAATCGAATCAGAAGAATCTGGGTACCATCAAATG 52010 Query 75985 CTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGCAA 76044 || | || || ||| | || || ||| | ||||| |||||| || || Sbjct 52011 TAGTAACTTGTGTTGTGAGATTATTGAATATACATCTCCTGATGAAGTGGCTGTGTGTAA 52070 Query 76045 TTTGGCATCAATCGCCCT-TCCAAAGTATGTCAATGAAGAGACTCGCACTTTTGATTATG 76103 |||||| || |||||| | | |||| | ||| |||| || | | || ||| | Sbjct 52071 TTTGGCTTCCATCGCCTTGTGCAAA-TTTGTAAATGTGGAAAAAAGAGAATTCAATTTTA 52129 Query 76104 AAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCATTGACAGAA 76163 | || ||| | ||||| || || ||| |||| ||| || | | | | || || ||| Sbjct 52130 ACAAGCTTTACGAAATTACCAAAATTATTACTCGTAATTTAGATCAAATAATCGAACGAA 52189 Query 76164 ATTTTTATCCCGTTGAGACTGCGCGAAAGTCTAATATGCGACACAGACCTATTGGTTTGG 76223 ||| || || || || || | ||| |||| | |||||||||| || || | | Sbjct 52190 ATTACTACCCTGTGAAGGAAGCTGAGAGGTCCAATAAGAGACACAGACCCATAGGGATAG 52249 Query 76224 GTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGCATTTGATTCAGATGAAG 76283 | || || || | ||||| ||||| | | | || ||| ||| || || | Sbjct 52250 GAGTACAGGGGTTGGCGGACACCTTTATGCTACTCAGATATCCATATGAATCTGACTCTG 52309 Query 76284 CCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCCTGGA---GGCGA 76340 | || || | ||| | || || |||||||||||| | || | |||| | | | Sbjct 52310 CAAAAGAATTAAATAAAAGAATTTTCGAAACCATGTATTATGCTGCATTGGAAATGTCCA 52369 Query 76341 GTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCTCCCGCGTCCC 76400 || |||||||| ||| | || | ||||| || | | || ||| || || Sbjct 52370 --TG-GAATTGGCACAAGTGTATGGACCTTATGAAACGTATCCTGGAAGTCCAGCTAGCC 52426 Query 76401 AAGGGGTGCTTCAGTTTGATATGTGG-----GAAGGT-GAAACCAAGCTCAACTACGACT 76454 |||| | ||||| ||||| |||||| |||||| || | ||| | | |||| Sbjct 52427 AAGGAATTCTTCAATTTGACATGTGGAATGTGAAGGTGGATAATAAG---TATTGGGACT 52483 Query 76455 GGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCAC 76514 ||||| ||||||| || || ||| | | || | | || ||| ||| | || | Sbjct 52484 GGGATAAACTCAAGGCACAAATAAAGAAACACGGATTGAGGAATTCTCTCTTGCTTGCTC 52543 Query 76515 CAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCATACA 76574 ||||||| || || ||||| |||| ||| |||| || ||||||| ||||| ||||||| Sbjct 52544 CAATGCCTACTGCTTCCACGTCACAGATCCTGGGCAACAATGAATCTTTTGAGCCATACA 52603 Query 76575 CAA 76577 ||| Sbjct 52604 CAA 52606 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596567750634240