Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20fragile_20[genbank_20GCA_5F000956335.1_202015-03-20] 248 sequences; 25,914,542 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq45 102 1e-16 seq23 98.7 2e-15 >seq45 Length=210479 Score = 102 bits (112), Expect = 1e-16 Identities = 101/131 (77%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || ||||||||||| ||||| || | |||||| |||||||| || ||||| ||||| Sbjct 198054 ATCTTCCAATTGTTTTCCAGCAAATATAAGTCTCTGCTGATCAGGTGGAATTCCCTCTTT 197995 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 || || ||||| | ||||| |||| ||| || || || ||||| || || | || || Sbjct 197994 GTCCTGAATTTTCGCTTTTACATTTTCAATTGTGTCCGATGACTCCACGTCCAAGGTGAT 197935 Query 193325 AGTTTTACCTG 193335 ||||| |||| Sbjct 197934 GGTTTTTCCTG 197924 >seq23 Length=358523 Score = 98.7 bits (108), Expect = 2e-15 Identities = 121/164 (74%), Gaps = 1/164 (1%) Strand=Plus/Plus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || ||||||||||| | | | |||| ||||| || ||||| || | ||| || || Sbjct 176677 ATCCTCCAATTGTTTTCCTGAATATATTAGCCTCTGCTGGTCAGGTGGGACTCCGTCCTT 176736 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 || || ||||| | ||| | ||| ||| || ||||| | ||| || || || || || Sbjct 176737 ATGTTCAATTTTTGATTTAACATTCCTAATGGTTTCGGATGGCTCCACATCCAGGGTGAT 176796 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT-ATTA 193367 ||| | || ||| |||||||| |||||||||||||| |||| Sbjct 176797 GGTTCTTCCGCTTAATGTTTTTACGAATATTTGCATTTTGATTA 176840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899651611071360