Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20fragile_20[genbank_20GCA_5F000956335.1_202015-03-20] 248 sequences; 25,914,542 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq16 123 5e-23 seq45 95.1 2e-14 seq23 91.5 3e-13 >seq16 Length=409614 Score = 123 bits (136), Expect = 5e-23 Identities = 353/540 (65%), Gaps = 9/540 (2%) Strand=Plus/Minus Query 49829 AAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGG 49888 |||||| || || || || || || | | || || |||||||| ||||| | || | Sbjct 248063 AAAATCTGTGTGCAATCCTTCATCTCGACTAATTAACTCATTACTGAAAGTCAGGCCATG 248004 Query 49889 CATTAATCCTCTCTTT-TTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATAC 49947 || | | | ||| |||| |||||| || | || || | | ||| || || | Sbjct 248003 CAACT-TGTTTTGTTTCTTAAACCAAAAGATAGCACAGAAGCTTCCACTAAATAAAATGC 247945 Query 49948 CCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAATATCC 50007 |||||||||| ||| ||||| ||| ||| || |||| | ||| | ||| |||| Sbjct 247944 CCTCGACACAAGCATTTGCTACTATCCTTTCTGCAAAGG--AGTTTGT-ATCGTTGATCC 247888 Query 50008 AATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAATA 50067 | || ||||| ||||| || || | || || |||||||| ||||| | ||| | Sbjct 247887 ATTTGGCTGCCCACAACGCTTTGTTCTTCACAGCTGGAATATTTTCAATAGCATGAAACA 247828 Query 50068 A-TTCAtttttttCATNNNNNNNNNNNNNNNNNNNNNNNATTAATAAAGAATACATTTCA 50126 | |||||| | | | | |||||||| ||| | || Sbjct 247827 AATTCATTCTCTCC-TTCTCGTCCTTTATGTAGTTGTCAATTAATAAGCTGTACGTCTCC 247769 Query 50127 GAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTGCTTCTGAATACTGA 50186 || || | | ||| | |||||||| || || ||||||| ||||||| | || Sbjct 247768 GAGTGAATATTTTCAACTGCTATTTGGAAGGAGTAAAATTTCTTTGCTTCCGTTATTTGC 247709 Query 50187 ACTTCG-GAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTGCGAA 50245 |||| | | ||| | | | || ||||||| || ||||||| |||||| ||||| || Sbjct 247708 ACTTGGCGTAAAAATTTGCTCG-CTAAATTTTCCAATACAATTCCATCACTGGCTGCAAA 247650 Query 50246 GAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCCAAGATTC 50305 || || || || | ||||||||||||||||||||| || ||||| ||||| || || Sbjct 247649 AAAAGCCAACACATGTTTAATAAAATGTTTTTCATTTTCATTTAATTTTTCGAAATCTTT 247590 Query 50306 AAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAATGATGCTACGGATTTTTTATA 50365 | |||| | || || || | ||| || |||||| || || ||| | | ||||||||| Sbjct 247589 TAAATCGCTAGACAAGTCAATTTCCTCAGCTGTCCAGAAGGACGCTTCCGCTTTTTTATA 247530 >seq45 Length=210479 Score = 95.1 bits (104), Expect = 2e-14 Identities = 99/130 (76%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 192380 CATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTT 192439 |||| ||||||||||| |||||||| || | |||||| ||||||||||| ||||| |||| Sbjct 198055 CATCTTCCAATTGTTTTCCAGCAAATATAAGTCTCTGCTGATCAGGTGGAATTCCCTCTT 197996 Query 192440 TATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAA 192499 | || || ||||| ||||||||| || | || || || || || || | || | Sbjct 197995 TGTCCTGAATTTTCGCTTTTACATTTTCAATTGTGTCCGATGACTCCACGTCCAAGGTGA 197936 Query 192500 TGGTTTTACC 192509 ||||||| || Sbjct 197935 TGGTTTTTCC 197926 >seq23 Length=358523 Score = 91.5 bits (100), Expect = 3e-13 Identities = 120/165 (73%), Gaps = 1/165 (1%) Strand=Plus/Plus Query 192380 CATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTT 192439 |||| ||||||||||| || | | | |||| ||||| || |||||||| | ||| || | Sbjct 176676 CATCCTCCAATTGTTTTCCTGAATATATTAGCCTCTGCTGGTCAGGTGGGACTCCGTCCT 176735 Query 192440 TATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAA 192499 ||| || ||||| ||| ||||| | || | || || | || || || || || | Sbjct 176736 TATGTTCAATTTTTGATTTAACATTCCTAATGGTTTCGGATGGCTCCACATCCAGGGTGA 176795 Query 192500 TGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT-ATTA 192543 ||||| | || |||||||||| | ||||| |||||||| |||| Sbjct 176796 TGGTTCTTCCGCTTAATGTTTTTACGAATATTTGCATTTTGATTA 176840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984476871814800