Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20fragile_20[genbank_20GCA_5F000956335.1_202015-03-20] 248 sequences; 25,914,542 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq16 123 5e-23 seq23 102 1e-16 seq45 91.5 3e-13 >seq16 Length=409614 Score = 123 bits (136), Expect = 5e-23 Identities = 162/222 (73%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 39447 GCTATTTGAAATGAATAAAATTGCCTTGCTTCTGAATACTGAACTTCG-GAAAAGAATCG 39505 |||||||| || || ||||||| | ||||||| | || |||| | | ||| | | | Sbjct 247750 GCTATTTGGAAGGAGTAAAATTTCTTTGCTTCCGTTATTTGCACTTGGCGTAAAAATTTG 247691 Query 39506 TTCAACTAAATTCTCAGATACAATACCATCAGATGCTGCGAAGAATGCTAAAACATATTT 39565 || ||||||| || ||||||| |||||| ||||| || || || || |||| ||| Sbjct 247690 CTCG-CTAAATTTTCCAATACAATTCCATCACTGGCTGCAAAAAAAGCCAACACATGTTT 247632 Query 39566 AATAAAATGTTTTTCATTATCTTTTAAATTTTCCCAAGATTCAAGATCGTTTGATAAATC 39625 |||||||||||||||||| || ||||| ||||| || || | |||| | || || || Sbjct 247631 AATAAAATGTTTTTCATTTTCATTTAATTTTTCGAAATCTTTTAAATCGCTAGACAAGTC 247572 Query 39626 TACTTCTTCTATTGTCCAAAAAGATGCTACGGATTTTTTATA 39667 | ||| || |||||| || || ||| | | ||||||||| Sbjct 247571 AATTTCCTCAGCTGTCCAGAAGGACGCTTCCGCTTTTTTATA 247530 >seq23 Length=358523 Score = 102 bits (112), Expect = 1e-16 Identities = 121/163 (74%), Gaps = 1/163 (1%) Strand=Plus/Plus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || ||||||||||| || | | | |||| ||||| ||||||||||| | ||| || ||| Sbjct 176678 TCCTCCAATTGTTTTCCTGAATATATTAGCCTCTGCTGGTCAGGTGGGACTCCGTCCTTA 176737 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 | || ||||| ||| ||||| | || || || || | || || || || || ||| Sbjct 176738 TGTTCAATTTTTGATTTAACATTCCTAATGGTTTCGGATGGCTCCACATCCAGGGTGATG 176797 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT-ATTA 172076 ||| | || |||||||||| | |||||| |||||||| |||| Sbjct 176798 GTTCTTCCGCTTAATGTTTTTACGAATATTTGCATTTTGATTA 176840 >seq45 Length=210479 Score = 91.5 bits (100), Expect = 3e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || ||||||||||| |||||||| || | |||||| || |||||||| ||||| ||||| Sbjct 198053 TCTTCCAATTGTTTTCCAGCAAATATAAGTCTCTGCTGATCAGGTGGAATTCCCTCTTTG 197994 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 || || ||||| ||||||||| || || || || || || || || | || ||| Sbjct 197993 TCCTGAATTTTCGCTTTTACATTTTCAATTGTGTCCGATGACTCCACGTCCAAGGTGATG 197934 Query 172035 GTTTTACC 172042 ||||| || Sbjct 197933 GTTTTTCC 197926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905133194078400