Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20fragile_20[genbank_20GCA_5F000956335.1_202015-03-20] 248 sequences; 25,914,542 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq11 170 6e-37 seq27 138 3e-27 seq51 109 2e-18 >seq11 Length=477202 Score = 170 bits (188), Expect = 6e-37 Identities = 638/988 (65%), Gaps = 27/988 (3%) Strand=Plus/Minus Query 155557 TTTTATCCTCATTTACAAACATAC-CAAGACCAATAGACGCCAGATTACATACCGCAGTC 155615 |||| ||| |||||||||| | | |||| | | | || |||| |||||| || || | Sbjct 52114 TTTTTTCCACATTTACAAATTTGCACAAGGCGA-TGGAAGCCAAATTACACACAGC---C 52059 Query 155616 TCCTTGTC-GTCGCTGTAT--TCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTG 155672 | | || | | ||||| || | ||||||||| |||| |||| || |||||||| Sbjct 52058 ACTTCATCAGGAGATGTATATTCAATAATCTCACAACACAAGTTACTACATTTGATGGTA 51999 Query 155673 CCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTT 155732 || | ||||||||| || |||||| ||||||| |||||| || | ||||| || Sbjct 51998 CCCAGATTCTTCTGATTCGATTTAGCATTACAAGAATCCTTATACAACATGTAAGGAACA 51939 Query 155733 CCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTG 155792 || || || || || | | ||| | ||| | || | || | || Sbjct 51938 CCAGTTTCTATTTGACTTTGTAAAATGGCAAACCATAAATCTTGTGCCAGCACCGTTTTT 51879 Query 155793 TTG----TATCTGCCTTCCGACTCATATTTCATATACAGCGTTCGGTAATCCTCACCGTA 155848 || ||| | | ||| |||||||| | || || || | | || || || | Sbjct 51878 TTCCCCATATTTTC-TTCT---TCATATTTTAAGTAGAGTTTTTCGAATTCTTCTCCCCA 51823 Query 155849 ACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAACAGCGACCAAATTTTATTACCGAT 155908 | ||||| | || || || | || ||||| | || | |||| ||| ||| | | Sbjct 51822 TGACTCACTTAACCCTGGACATTCATTTGGGCACATGAGAGTCCAATTTTGATTTTCCTT 51763 Query 155909 TACACGCTCCATAAATACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGA 155968 || | || |||||| | ||| |||| | |||||| ||||| || | || | || Sbjct 51762 CACTCTCTTCATAAACAAGTCAGGTACCCACACAGCATAAAAAAGATCTCGAGC--TCGA 51705 Query 155969 C--TCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGT 156026 || || | || ||||| || | || ||||| ||||| ||| || | ||| | Sbjct 51704 AGTTCTTCCTTACCATGATTTTTTCTTAAATCTAAAAATTCAAAAATGTCTGAATGCCAT 51645 Query 156027 GGCTCCAGATACATAGCAAAACTACCATTCCTCTTGCCACCC---TGATCTACATACCGA 156083 || || | ||| | |||||| || || ||||| || || ||||| ||||||| | Sbjct 51644 GGTTCAATATAAACTGCAAAAGACCCCTTTCTCTTTCCTCCTCCTTGATCCACATACCTA 51585 Query 156084 GCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCG 156143 || || | ||| || || | ||||| || | | |||||||| | ||||| ||||| Sbjct 51584 GCTGTATCATTAAATACCCTAAGCATTGGTACTAGCCCATTGGATATTCCATTTGTTCCT 51525 Query 156144 CGAATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCAT 156203 | ||||| ||| | | || || || | || ||| || ||||| | Sbjct 51524 CTAATATATGAATTTTGTCCTCTAATATCTTGTACTGCTACTCCTATCCCACCAGCTGTC 51465 Query 156204 TTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCC 156263 || |||| || |||| ||||| || | || ||||||||||| || ||| || | Sbjct 51464 TTGCTAATTAACGCACATTGCTTTAGTGTTTCAAATATACCTTCAATCGAGTCAGATTTC 51405 Query 156264 ATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTA 156323 || | || ||| | || ||| | ||| || | || || |||| ||||| | ||| Sbjct 51404 ATGCAGAGGAGAAAACAGGAAGACATTTGTGGCCTGGGCGTACCAGAATTGAACAAGGTA 51345 Query 156324 GGTGTTGCATGAATAAAATACTTATTAGACATATAATCGTATGTCTCCTTAAT--CTTCT 156381 ||||| ||||| | |||||||| | ||||| ||| ||||||||| |||| ||| | Sbjct 51344 GGTGTAGCATGTGTGAAATACTTTTGTGACATCAAATGGTATGTCTC--TAATGCCTTTT 51287 Query 156382 CAAGATTAGACCCGTGAATACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTA 156441 | | || | ||| || | || || || |||||| || ||| || || ||||| | Sbjct 51286 CCAAATCACCAATGTGGATCCCAATCGATACTCTCATCAGCAGATGTTGTGGTCGCTCAA 51227 Query 156442 CAATCACTCCATCAATTCGCAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATAAT 156501 || ||||| ||| || || ||||||| | ||| | ||| || || || ||||| | Sbjct 51226 TTATTTTTCCATTAATACGAAGGAGGTATGACCTTTCTAAAGTCTTGAATCCAAAATAGT 51167 Query 156502 CAAACAGAAAATCACGGTTGTAATCAAT 156529 || | |||||| || ||||||| || Sbjct 51166 CATAGTTAAAATCTCGTGTGTAATCGAT 51139 >seq27 Length=315292 Score = 138 bits (152), Expect = 3e-27 Identities = 303/443 (68%), Gaps = 16/443 (4%) Strand=Plus/Plus Query 288873 TAATG-CTGGGTCTAATATATCGGCTCTGTTTGTTGCTGCCAATACAACAA--TAG--AT 288927 ||||| ||||||| | ||||| ||| ||| || ||||||| || || | | | || Sbjct 39910 TAATGGCTGGGTCCAGAATATCCACTCGGTTAGTGCCTGCCAAAACTACTACTTTGTCAT 39969 Query 288928 TCG--GTTTGCTTAAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTT 288985 | | || || ||| |||||||| ||| |||||||| | ||| | ||| |||| Sbjct 39970 TGGCAGTATG---AAACCCATCCATCTCCACTAACATTTGATTCAATGTATTTTCTCTTT 40026 Query 288986 CATCATTTGAACCTCTTG--AATCACCCGAATCGCTCCtttttttACCAACAGCATCAAT 289043 |||||||| || | || || | || ||| ||| || |||| || |||||||| Sbjct 40027 CATCATTTCCTCCACCTGCGAAGCCACCTT-TCGA-CCTCTTCCTACCCACTGCATCAAT 40084 Query 289044 TTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTAC 289103 ||||||||| ||||| | ||||| | || || ||| || |||||||||||||| || Sbjct 40085 TTCGTCAATAAAAATTATGCACGGTGCATGTTTTCTTGCTTGAGCAAATAATTCTCTCAC 40144 Query 289104 ACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAA 289163 | ||| | ||||| ||||||| ||| ||| | ||| ||| | || | || || Sbjct 40145 TCTGGAAGGTCCAATACCAACAAACACTTCAATAAAATCACTTCCACTTATGTTAAAAAA 40204 Query 289164 TGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGG 289223 | |||||| ||||| |||||||| || | || | | ||| || ||||||||||| || Sbjct 40205 AGGTACATTGGCTTCCCCTGCTACAGCTTTAGCTAATAATGTTTTTCCTGTTCCAGG-GG 40263 Query 289224 TCCCTCTAATAGAACTCCCTTT-GGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGC 289282 || | | || |||||| || | ||| ||||| | | ||| || |||| Sbjct 40264 CACCACACAGCAAAGCCCCTTTAGGCATTTTAGCCCCTAATGCTTCATACTTTGAAGGGG 40323 Query 289283 TCTTTAAAAATTCTACAATTTCC 289305 |||||||| || |||| |||| Sbjct 40324 CTTTTAAAAAGTCGACAAATTCC 40346 >seq51 Length=191336 Score = 109 bits (120), Expect = 2e-18 Identities = 218/323 (67%), Gaps = 0/323 (0%) Strand=Plus/Minus Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCA 289089 ||||| ||||||||||||||||| |||| | ||| |||| || || | | || | Sbjct 75996 CCAACTGCATCAATTTCGTCAATAAAAACGATACATGGAGCATGTTTTTTGGCTGCTTGG 75937 Query 289090 AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCG 289149 || | ||||||| | || |||| || || |||||||| ||||||| || | Sbjct 75936 AAGAGCTCTCTTATCCTTCTAGCACCAACTCCTACGAACATTTCTTCAAATTCCGAGCCT 75877 Query 289150 GATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTA 289209 ||| |||||||||||| ||||| ||||| ||||||| || || || | | || || Sbjct 75876 GATGCTTGAATGAATGGGACATTCGCTTCCCCTGCTATCGCTCTAGCAATTAACGTTTTT 75817 Query 289210 CCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTTA 289269 ||||| || ||| || | || | ||||| |||| || || || || Sbjct 75816 CCTGTGCCCGGTTCGCCGGACAGGAGTATCCCCTTCGGTAACTTAGCACCTATTTTTGTA 75757 Query 289270 TATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCA 289329 |||| || | | | || ||| | || | ||||| || ||||| | ||| | || ||| Sbjct 75756 AATTTATCTGAGTTTTTCAAATAATCAATTATTTCTTCCAGTTCTTGTTTCACTTCGTCA 75697 Query 289330 CATCCTGCTACATCAGCAAAAGT 289352 || ||| |||||| |||||||| Sbjct 75696 CACCCTTTTACATCTGCAAAAGT 75674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471812923299576