Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20fragile_20[genbank_20GCA_5F000956335.1_202015-03-20] 248 sequences; 25,914,542 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq11 181 3e-40 seq87 86.0 1e-11 seq10 84.2 5e-11 >seq11 Length=477202 Score = 181 bits (200), Expect = 3e-40 Identities = 583/900 (65%), Gaps = 25/900 (3%) Strand=Plus/Plus Query 110274 ATCGATTATACTCGTGACTATGATATTGACTATTTTGGTTTCAAAACTCTTGAACGTGCT 110333 |||||||| || || || | | | |||||||||||| ||||| ||| | ||| | | Sbjct 51139 ATCGATTACACACGAGATTTTAACTATGACTATTTTGGATTCAAGACTTTAGAAAGGTCA 51198 Query 110334 TATTTACTTCGTGTCAATGGCGAGATCATTGAACGTCCTCAACACATGTTTCTTCGTGTT 110393 || | |||||| | ||||| | || ||||| || || ||||| || | | | || Sbjct 51199 TACCTCCTTCGTATTAATGGAAAAATAATTGAGCGACCACAACATCTGCTGATGAGAGTA 51258 Query 110394 GCGATTGGTATTCA---TGGACATGATATT--AAAGCTGTTATTGA---ATGTTATGATG 110445 ||||||| || || ||| |||| | |||| ||| || | | ||||| Sbjct 51259 TCGATTGGGATCCACATTGG---TGATTTGGAAAAGGCATTAGAGACATACCATTTGATG 51315 Query 110446 TATTAAGTAAAAAGAAAGCTATTCATGCTACTCCTACCCTATTTAACGCAGGAACTAATG 110505 | || ||| | | |||||||| |||||| | || || | || || Sbjct 51316 TCACAA-----AAGTATTTCACACATGCTACACCTACCTTGTTCAATTCTGGTACGCCCA 51370 Query 110506 GAGGACAATTGGCTTCTTGCTTTCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTT 110565 | |||| || |||| || ||||| || | || || ||| || ||||||||||| | Sbjct 51371 GGCCACAAATGTCTTCCTGTTTTCTCCTCTGCATGAAATCTGACTCGATTGAAGGTATAT 51430 Query 110566 ATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACG 110625 ||| | || || || ||| | ||| || | |||| || || || | | Sbjct 51431 TTGAAACACTAAAGCAATGTGCGTTAATTAGCAAGACAGCTGGTGGGATAGGAGTAGCAG 51490 Query 110626 TTCATGATATTCGCTCAAAAGGAGCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGAC 110685 | || |||||| | | || || |||| | | | || || || | ||| | Sbjct 51491 TACAAGATATTAGAGGACAAAATTCATATATTAGAGGAACAAATGGAATATCCAATGGGC 51550 Query 110686 TTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGGT---A 110742 | || |||||| | || || || || || || || | |||||| ||||||| || | Sbjct 51551 TAGTACCAATGCTTAGGGTATTTAATGATACAGCTAGGTATGTGGATCAAGGAGGAGGAA 51610 Query 110743 AGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCT 110802 ||||||| || || ||||| | ||| | ||||| ||||||||||| || |||||||| | Sbjct 51611 AGAGAAAGGGGTCTTTTGCAGTTTATATTGAACCATGGCATTCAGACATTTTTGAATTTT 51670 Query 110803 TAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAA 110862 |||| | | |||||||| || ||||||| |||| || ||| | |||||||| Sbjct 51671 TAGATTTAAGAAAAAATCATGGTAAGGAAGAACTTCGAGCTCGAGATCTTTTTTATGCTG 51730 Query 110863 TGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGT 110922 ||||| | | || || || ||||| | || | |||||| | ||| |||| |||| Sbjct 51731 TGTGGGTACCTGACTTGTTTATGAAGAGAGTGAAGGAAAATCAAAATTGGACTCTCATGT 51790 Query 110923 GTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACG 110982 | || || | ||| || || ||| || ||| |||| || ||| | || ||| Sbjct 51791 GCCCAAATGAATGTCCAGGGTTAAGTGAGTCATGGGGAGAAGAATTCGAAAAACTCTACT 51850 Query 110983 AAAAATATGAAAAAGAAGGCAAGTTTCGCAAACAAA---TTCCAGCTCAAGAACTTTGGT 111039 |||||||||| ||||| || | | ||| ||| | | || ||||| | |||| Sbjct 51851 TAAAATATGAAGAAGAA---AATATGGGGAAAAAAACGGTGCTGGCACAAGATTTATGGT 51907 Query 111040 TCAAAATCCTTGAATCACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGATCATA 111099 | || | || ||| | |||||||| |||||| || |||||||| ||| | Sbjct 51908 TTGCCATTTTACAAAGTCAAATAGAAACTGGTGTTCCTTACATGTTGTATAAGGATTCTT 51967 Query 111100 TTAATCGCAAATCTAATCAAATGAATTTAGGAACAATTAAGTCTAGTAATTTGTGCTGTG 111159 |||| ||||| ||||| | |||| | || || || || | |||||| ||||| |||| Sbjct 51968 GTAATGCTAAATCGAATCAGAAGAATCTGGGTACCATCAAATGTAGTAACTTGTGTTGTG 52027 Score = 84.2 bits (92), Expect = 5e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 112985 GAAACATGGAACTACAAACTCTCTACTGTTGGCACCAATGCCTACAGCTTCGACTGCACA 113044 |||||| ||| | || ||||| || | || ||||||||||| ||||| || |||| Sbjct 52509 GAAACACGGATTGAGGAATTCTCTCTTGCTTGCTCCAATGCCTACTGCTTCCACGTCACA 52568 Query 113045 GATTCTCGGTAATAATGAATGTTTCGAGCCAATTACAAGTAATATTTAT 113093 ||| || || || ||||||| ||| |||||| ||||||||||||||| Sbjct 52569 GATCCTGGGCAACAATGAATCTTTTGAGCCATACACAAGTAATATTTAT 52617 >seq87 Length=80277 Score = 86.0 bits (94), Expect = 1e-11 Identities = 93/121 (77%), Gaps = 2/121 (2%) Strand=Plus/Plus Query 72288 ATGCTTTA-ATAAGAAATTCTCATCTTCAAAAGTTTCTCCATATATACTTTGACCTGAGC 72346 |||||||| || | ||||| || ||||||||| ||||||||||||||||| | | Sbjct 33897 ATGCTTTACATCA-AAATTTTCGTCTTCAAAATTTTCTCCATATATACTTAAGCTCCCAC 33955 Query 72347 TTCCATCAAAGTTCACAATATCACCTCCTTGAACCATAAAATTATTAATTACTCTATGGA 72406 |||||| ||||||||| ||| || || |||| |||||| | || || ||||| |||| Sbjct 33956 TTCCATTGTAGTTCACAAAATCTCCCCCCTGAATCATAAACTCCTTTATCACTCTGTGGA 34015 Query 72407 A 72407 | Sbjct 34016 A 34016 >seq10 Length=481316 Score = 84.2 bits (92), Expect = 5e-11 Identities = 101/135 (75%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 58937 ACATAAAATTGACATAAAATATGACAAGGAGGAAGTGCCATTTTATCAATATCACTTACA 58996 || |||||||||||||| || ||||||||||| | ||||||| ||| | ||| ||||| Sbjct 82219 ACGTAAAATTGACATAAGATGTGACAAGGAGGTAAAGCCATTTGATCCAAATCCTTTACA 82278 Query 58997 TTCCATGCACTGAAAATAATGCGACGAGAATGAGGGTCA-TTTTTAATAAGTTCTTCACA 59055 |||||||||| || ||||| | | | || ||| |||||| ||| || | || Sbjct 82279 TTCCATGCACACAAGATAATTCTCCTACTTGTTGGTTCATTTTTTATTAAATTAATAAC- 82337 Query 59056 ATGTTTTATTTGGTC 59070 || ||||| |||||| Sbjct 82338 ATTTTTTAATTGGTC 82352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186809028902328