Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20fragile_20[genbank_20GCA_5F000956335.1_202015-03-20] 248 sequences; 25,914,542 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq11 298 8e-76 seq16 136 5e-27 >seq11 Length=477202 Score = 298 bits (330), Expect = 8e-76 Identities = 1008/1546 (65%), Gaps = 49/1546 (3%) Strand=Plus/Minus Query 68696 TAAGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATAT 68755 |||| || || || || |||| || || ||| ||||| || | | ||||||| Sbjct 52669 TAAGTAGGTGGGGGTTCACTACAAAGAACTCTCCACTCAACACCCTCCTATAATAAATAT 52610 Query 68756 TACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTG 68815 |||| || ||||| || | ||||||||| || ||||| || || | || || ||||| | Sbjct 52609 TACTTGTGTATGGCTCAAAAGATTCATTGTTGCCCAGGATCTGTGACGTGGAAGCAGTAG 52550 Query 68816 GCATAGGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGAT 68875 |||| || || | ||| | | ||| || | || ||| | | |||| | || || | Sbjct 52549 GCATTGGAGCAAGCAAGAGAGAATTCCTCAATCCGTGTTTCTTTATTTGTGCCTTGAGTT 52490 Query 68876 GTTTCCAATCCCAAAGATCAGATGGTACA-----ACATTCCAAAGATCGTATTGTAGAAT 68930 | ||| |||||| | | | | || |||||||| | || |||| ||||| Sbjct 52489 TATCCCAGTCCCAATACTTA--TTATCCACCTTCACATTCCACATGTCAAATTGAAGAAT 52432 Query 68931 TCCGTTACTTGCATATGATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTC 68990 ||| | || || |||| ||| |||||||||||||| | | || || | ||| Sbjct 52431 TCCTTGGCTAGCTGGACTTCCAGGATACGTTTCATAAGGTCCATACACTTGTGCCAATTC 52372 Query 68991 ACAACTTGCC---TCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATC 69047 || | | | || |||||| | ||||| || ||||||||||| | ||||| | || Sbjct 52371 -CA--TGGACATTTCCAATGCAGCATAATACATGGTTTCGAAAATTCTTTTATTTAATTC 52315 Query 69048 TTGTGCT---TCTAGACTATCGAATGGATAATGTAAAAGAATAAATGCATCTGCCAATCC 69104 || ||| || ||| | | ||||||| | || ||||| | || ||||| || Sbjct 52314 TTTTGCAGAGTC-AGATT--CATATGGATATCTGAGTAGCATAAAGGTGTCCGCCAACCC 52258 Query 69105 CTGAACCCCAATACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGG 69164 ||| || || || || || ||||| ||||||||||| || || |||||||| | ||| Sbjct 52257 CTGTACTCCTATCCCTATGGGTCTGTGTCTCTTATTGGACCTCTCAGCTTCCTTCACAGG 52198 Query 69165 ATAATAATTAATATCTATAATTTTATTAAGATTTCGGACTACTACTTTAACCACGTCCTT 69224 || ||||| || || |||| || | ||| || | || || ||| | | | | Sbjct 52197 GTAGTAATTTCGTTCGATTATTTGATCTAAATTACG-AGTAATAATTTTGGTAATTTCGT 52139 Query 69225 TA-GTTTGAGAAAATCAAATCGTCCATCTATAACAA--ACATATT----CAGTGCTACAG 69277 | | ||| ||||| ||| || | | ||| ||| ||| || || | | Sbjct 52138 AAAGCTTGTTAAAATTGAATTCTCTTTTTTCCACATTTACAAATTTGCACAAGGCGATGG 52079 Query 69278 ATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATA 69337 | || | |||||| || || || |||| || | || ||||| || ||||| ||| | Sbjct 52078 AAGCCAAATTACACACAGCCACTTCATCAGGAGATGTATATTCAATAATCTCACAACACA 52019 Query 69338 GATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCT 69397 |||||||||||||| || |||||||| | |||||| || ||||| | |||| Sbjct 52018 AGTTACTACATTTGATGGTACCCAGATTCTTCTGATTCGATTTAGCATTACAAGAATCCT 51959 Query 69398 TGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGA 69457 | || | || | ||| ||||||||| || ||| || | ||| | ||||| | Sbjct 51958 TATACAACATGTAAGGAACACCAGTTTCTATTTGACTTTGTAAAATGG-----CAAACCA 51904 Query 69458 CCCTAGCATTT---ATTACGGTCTTGTAACGC---TTCTCTTTTTCATATTGTGTATATA 69511 | | | | | || || || | | | || |||| |||||||| | || | Sbjct 51903 TAA-ATCTTGTGCCAGCACCGTTTTTTTCCCCATATTTTCTTCTTCATATTTTAAGTAGA 51845 Query 69512 GCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCA 69571 | ||||||||| |||||||| ||| || || |||||||||||||| ||||| | Sbjct 51844 GTTTTTCGAATTCTTCTCCCCATGACTCACTTAACCCTGGACATTCATTTGGGCACATGA 51785 Query 69572 ATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTA 69631 | ||| | || ||||| |||| |||||||| | || || | ||| | ||| Sbjct 51784 GAGTCCAATTTTGATTTTCCTTCACTCTCTTCATAAACAAGTCAGGTACCCACACAGCAT 51725 Query 69632 TAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACT 69691 ||| ||||||| | || | |||||| || || ||||||| | | ||| | ||| | Sbjct 51724 AAAAAAGATCTCGAGCTCGAAGTTCTTCCTTACCATGATTTTTTCTTAAATCTAAAAATT 51665 Query 69692 CCATAATATCAGAATGCCATGGTTCTAGATATATCGC-CATGACTCCCGGTCGTTTATTT 69750 | | ||| || |||||||||||||| | ||| | || | ||| ||| || || | Sbjct 51664 CAAAAATGTCTGAATGCCATGGTTCAATATAAACTGCAAAAGAC-CCCTTTCTCTTTCCT 51606 Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 ||||| ||||| | || || || || | |||| | || || ||||| || | | ||| Sbjct 51605 CCTCCTTGATCCACATACCTAGCTGTATCATTAAATACCCTAAGCATTGGTACTAGCCCA 51546 Query 69811 TTAGATTTACCATTTGTTCCAGAAATATA--ACTTCCTCTTGCGCGAATAT-TACTAATA 69867 || ||| | ||||||||||| |||||| | || | | | | ||||| | || | Sbjct 51545 TTGGATATTCCATTTGTTCCTCTAATATATGAATT--TTGTCCTCTAATATCTTGTACT- 51489 Query 69868 GATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATAT 69927 | || ||||| || || || | || |||| ||||| | || | ||| ||| || Sbjct 51488 GCTACTCCTATCCCACCAGCTGTCTTGCTAATTAACGCACATTGCTTTAGTGTTTCAAAT 51429 Query 69928 ATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGT 69987 ||||| || || ||| | ||||| || ||||||||| ||||||||| | Sbjct 51428 ATACCTTCAATCGAGTCAGATTTCATGCAGAGGAGAAAACAGGAAGACATTTGTGGCCTG 51369 Query 69988 ATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGA 70047 || || | ||| || || ||||| | || || ||||| | |||| || | || | Sbjct 51368 GGCGTACCAGAATTGAACAAGGTAGGTGTAGCATGTGTGAAATACTTTTGTGACATCAAA 51309 Query 70048 TTGTATGTTTCAATAGCTGATTCTATATC-CCACTGATGAATTCCTATCGCGACACGCAT 70106 | |||||| || | || ||| | ||| ||| || || || || |||| || | ||| Sbjct 51308 TGGTATGTCTCTAATGCCTTTTCCAAATCACCAATG-TGGATCCCAATCGATACTCTCAT 51250 Query 70107 CAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTC 70166 || || ||| || ||||| || | |||| ||| || | |||||||| |||| Sbjct 51249 CAGCAGATGTTGTGGTCGCTCAATTATTTTTCCATTAATACGAAGGAGGTATGACCTTTC 51190 Query 70167 CAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAA 70212 | ||| || || |||||||||| || ||| |||| | |||| Sbjct 51189 TAAAGTCTTGAATCCAAAATAGTCATAGTTAAAATCTCGTGTGTAA 51144 >seq16 Length=409614 Score = 136 bits (150), Expect = 5e-27 Identities = 348/523 (67%), Gaps = 10/523 (2%) Strand=Plus/Minus Query 39638 CCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTT 39697 || ||||||| ||||||||| || ||| || || || ||| ||| | || Sbjct 248047 CCTTCATCTCGACTAATTAACTCATTACTGAAAGTCAGGCCATGCAACTTGTTTTGTTTC 247988 Query 39698 TTGAGCCAAAATATGGCAGCAAAAGAT-CCAGAAAAGAAGATGCCTTCTACTGCTGCAAA 39756 || | |||||| || ||| || ||| | ||| ||| || ||||| || || ||| Sbjct 247987 TTAAACCAAAAGATAGCA-CAGAAGCTTCCACTAAATAAAATGCCCTCGACACAAGCATT 247929 Query 39757 TGCAACAAGTCTCTCTCC---GTAACTTGTATCATTATGTATCCACTTCTGTGCCCAATC 39813 ||| || | || ||| | | | ||||||| || ||||| || |||||| Sbjct 247928 TGCTACTATCCTTTCTGCAAAGGAGTTTGTATCGTTG---ATCCATTTGGCTGCCCACAA 247872 Query 39814 AGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATA-ATGTTTTTCAT 39872 ||||| ||||| ||| || || |||| ||||||| ||| | || || | | | | Sbjct 247871 CGCTTTGTTCTTCACAGCTGGAATATTTTCAATAGCATGAAACAAATTCATTCTCTCCTT 247812 Query 39873 CACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAA 39932 | | ||||| || | || ||||| | || ||| | || || || || ||||||| Sbjct 247811 CTCGTCCTTTATG-TAGTTGTCAATTAATAAGCTGTACGTCTCCGAGTGAATATTTTCAA 247753 Query 39933 TCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATC 39992 || || || || |||||| ||||||| || ||||| || | ||||| Sbjct 247752 CTGCTATTTGGAAGGAGTAAAATTTCTTTGCTTCCGTTATTTGCACTTGGCGTAAAAATT 247693 Query 39993 TTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTT 40052 | ||| |||||||| || ||||||||||| || |||||||| ||||| ||||||| Sbjct 247692 TGCTCGCTAAATTTTCCAATACAATTCCATCACTGGCTGCAAAAAAAGCCAACACATGTT 247633 Query 40053 TAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTGATATAT 40112 ||||||||| |||||||| | ||||| | | || || | ||| | || | | Sbjct 247632 TAATAAAATGTTTTTCATTTTCATTTAATTTTTCGAAATCTTTTAAATCGCTAGACAAGT 247573 Query 40113 CTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTA 40155 | | ||| ||||||||||| || ||||| || || ||||| || Sbjct 247572 CAATTTCCTCAGCTGTCCAGAAGGACGCTTCCGCTTTTTTATA 247530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686906670582720