Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20fragile_20[genbank_20GCA_5F000956335.1_202015-03-20] 248 sequences; 25,914,542 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq16 129 5e-25 seq10 111 1e-19 seq143 107 2e-18 >seq16 Length=409614 Score = 129 bits (142), Expect = 5e-25 Identities = 362/548 (66%), Gaps = 16/548 (3%) Strand=Plus/Plus Query 43742 TACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTA 43801 || |||||||| | ||||| || |||||||| || ||| |||| ||| ||| || ||| Sbjct 247530 TATAAAAAAGCGGAAGCGTCCTTCTGGACAGCTGAGGAAATTGACTTGTCTAGCGATTTA 247589 Query 43802 GCACATTGGATTGCATTAAAACCACAAGAAAAACATTTTAT--ATCTTTGGTTTTGGCGT 43859 | ||| |||||| | | |||||||||||||| | | | || ||||| | Sbjct 247590 AAAGATTTCGAAAAATTAAATGAAAATGAAAAACATTTTATTAAACAT--GTGTTGGCTT 247647 Query 43860 TTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAG 43919 ||||||| || || || || || || |||||||| | || ||| | ||| Sbjct 247648 TTTTTGCAGCCAGTGATGGAATTGTATTGGAAAATTTAGCGAGCAAATTTTTACGCCAAG 247707 Query 43920 TTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATT 43979 | ||| || | |||||| ||||| || ||||| || | ||||||||||| | Sbjct 247708 TGCAAATAACGGAAGCAAAGAAATTTTACTCCTTCCAAATAGCAGTTGAAAATATTCACT 247767 Query 43980 CGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGA- 44038 |||| | |||||| | | || || | ||||| || || | | | ||| || || | Sbjct 247768 CGGAGACGTACAGCTTATTAATTGACAACTACATAAAGGACGAGAAGGAG-AGAATGAAT 247826 Query 44039 TTGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAA 44098 |||||| |||| || |||| | || || | || | ||||| ||||| ||| Sbjct 247827 TTGTTTCATGCTATTGAAAATATTCCAGCTGTGAAGAACAAAGCGTTGTGGGCAGCCAAA 247886 Query 44099 TGGATAA---ATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAA 44155 ||||| | || ||| | || |||| |||| | | || || ||| ||| || Sbjct 247887 TGGATCAACGATACAA---ACTCCTTTGCAGAAAGGATAGTAGCAAATGCTTGTGTCGAG 247943 Query 44156 GGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATG 44215 |||||||| ||| ||| || || || |||||||| ||||||| | | || Sbjct 247944 GGCATTTTATTTAGTGGAAGCTTCTGTGCTATCTTTTGGTTTAAGAAACAAAACAAGTTG 248003 Query 44216 CCTGGGTTGACGTTTTCA--AATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATT 44273 | ||| |||| ||||| ||||||||||| ||||| |||||||| || || |||| Sbjct 248004 CATGGCCTGAC--TTTCAGTAATGAGTTAATTAGTCGAGATGAAGGATTGCACACAGATT 248061 Query 44274 TTGCTTGC 44281 || |||| Sbjct 248062 TTAATTGC 248069 >seq10 Length=481316 Score = 111 bits (122), Expect = 1e-19 Identities = 238/348 (68%), Gaps = 6/348 (2%) Strand=Plus/Minus Query 41010 ATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTGATGGCATTGCCACCTTGTCAT 41069 || || ||||| || ||||| || ||| | || ||||| || || |||||||| Sbjct 82298 ATTATCTTGTGTGCATGGAATGTAAAGGATTTGGATCAAATGGCTTTACCTCCTTGTCAC 82239 Query 41070 TTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAAT-TGTATCAAAGATC 41128 | |||||||| |||||||| | |||| |||||||||| || | ||||||| ||||| Sbjct 82238 ATCTTATGTCAATTTTACGTGTTTGATGGGAAACTGTCATG-CATTATGTATCAGAGATC 82180 Query 41129 AGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACGTATAT 41188 |||| |||| || |||||||| || ||||| || ||| | | |||| | || Sbjct 82179 TTGTGATTTGGGTCTTGGGGTCCCTTTCAACATCGCTTCCTATTCCATATTCACACACAT 82120 Query 41189 GATTGCACACGTTACCAATTTAAAACCTGGTGAATTTGTTCACACGTTAGGAGATGGACA 41248 ||||||||| || |||||| | |||| | || | || | || || ||| || Sbjct 82119 GATTGCACAGGTGTGCAATTTGCAGCCTGCACAGTTCATACATATTTTGGGCAATGCGCA 82060 Query 41249 TATTTACATTAATCACATAGAGCCGTTAACAGAACAAC-TGACACGAAAACCTAGACCAT 41307 | |||| ||||||||||| |||| || || | | ||| || |||| || | Sbjct 82059 CGTCTACAACAATCACATAGACAGCTTAAAAGTGCAGCTTAACAGGATCCCCTA-CCCGT 82001 Query 41308 TTCCAACGCTACTTATTAAACGC-GCTGTTGAAAACATTGATGATTTT 41354 | |||||||| | ||||| | | ||| | |||||||| |||||| Sbjct 82000 TCCCAACGCT-TAAACTAAACACAGATGTGAAGAACATTGAGGATTTT 81954 >seq143 Length=21787 Score = 107 bits (118), Expect = 2e-18 Identities = 331/510 (65%), Gaps = 23/510 (5%) Strand=Plus/Minus Query 19318 ATTAAACAATTGGGATGTAAACATGTTCGTGGACTTTTGCTTTATGGGCCACCGGGTTGT 19377 ||||||||| |||| |||||||| ||||| | | |||||||| ||||| Sbjct 4867 ATTAAACAACTGGGGATCAAACATGTAAAGGGACTCATTTTGTATGGGCCCCCGGGGACA 4808 Query 19378 GGAAAAACATTAATTGCGAGAGAACTTAGTAAATTACTTA---CAAAACAACCTCCCAAA 19434 |||||||||||||| || ||| | | ||||| ||| | | | | |||| ||| Sbjct 4807 GGAAAAACATTAATAGCTAGACAGATAGGTAAAACACTGAATGCGAGAGAACCA---AAA 4751 Query 19435 ATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAATGTACGA 19494 ||| | |||||||| ||||| ||||||||||||||||| || || ||||||||| | | Sbjct 4750 ATTATTAATGGTCCAGAAATATTAAATAAATATGTAGGACAGTCAGAAGAAAATATTAGG 4691 Query 19495 CGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGCA-AAAGTTC---TTT 19550 | ||| ||||| || ||| | |||| || | | | ||| ||| | Sbjct 4690 AACCTATTTAAAGACGCAGAGCTGGAATATAAAC----AGAGTGGAGAAAATTCACAGCT 4635 Query 19551 GCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGG---------TTC 19601 |||||||| || |||| ||| | || || || ||| || ||||| ||| Sbjct 4634 ACACATTATCATTTTAGACGAAATTGATGCTATTTGTCGACAGAGAGGTAGTGCTGCTTC 4575 Query 19602 TGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGT 19661 ||| | ||| ||| | || | |||| ||||| | || || ||| | || ||||| Sbjct 4574 AAGTGGGACTGGTGTAAACGATAGCATTGTGAATCAGTTACTCTCCAAAATTGATGGTGT 4515 Query 19662 TAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAG 19721 ||| |||||||||| | | || || ||||| || || | || ||||| || Sbjct 4514 AAACAGCTTGAATAATATACTGCTGATCGGAATGACCAACCGAATTGACTTAATTGATGA 4455 Query 19722 CGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAATG 19781 || | || ||||||| | || ||| | | || ||||| | | ||| || | Sbjct 4454 TGCGCTGTTGAGACCCGGGAGATTCGAACTGCACATAGAAATATCCCTCCCCAATAAGGA 4395 Query 19782 TGGACGTGTGGAAATTTTAAACATACATAC 19811 ||| | | ||||||| ||||| || || Sbjct 4394 GGGAAGGATCCAAATTTTGAACATTCACAC 4365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397454798689240