Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20fragile_20[genbank_20GCA_5F000956335.1_202015-03-20] 248 sequences; 25,914,542 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq11 105 6e-18 >seq11 Length=477202 Score = 105 bits (116), Expect = 6e-18 Identities = 646/1015 (64%), Gaps = 52/1015 (5%) Strand=Plus/Minus Query 130793 TAAATGTTGCTCGTGAACGGTTCAAAGGATTCGTTGTTGCCGAATATTTGTGCTGTAGTT 130852 ||||| || || ||| | || ||||| ||||| |||||||| | || |||| || | Sbjct 52616 TAAATATTACTTGTGTATGGCTCAAAAGATTCATTGTTGCCCAGGATCTGTGACGTGGAA 52557 Query 130853 GCGGTGGGCATGTATGCCACTAATAGAGAATTACGAAGACCGTGCGTCGTGATTTTTCGC 130912 || || ||||| || | || |||||||| | | ||||| || | |||| | | Sbjct 52556 GCAGTAGGCATTGGAGCAAGCAAGAGAGAATTCCTCAATCCGTGTTTCTTTATTTGTGCC 52497 Query 130913 TTCAATTCATCCCAATCCCATAGAGAGGTAGGTTTGACATTG---TTCCACATATCAAAT 130969 || | || |||||| ||||| | | || | || || |||||||| |||||| Sbjct 52496 TTGAGTTTATCCCAGTCCCA---ATACTTATTATCCACCTTCACATTCCACATGTCAAAT 52440 Query 130970 TGTAGTATGCCTTTACTGGCGGGACT----GGATTCGAACGATTCGTAGATTCCTTCGAC 131025 || || || |||| || || ||||| |||| ||| ||| || ||| | || Sbjct 52439 TGAAGAATTCCTTGGCTAGCTGGACTTCCAGGAT----ACGTTTCATAAGGTCCATACAC 52384 Query 131026 ACGAGCCAGGTCGTTGCTAGCTTCCAAAGCTCCGTAATAAATGGTTTCGGCAATTTGTTT 131085 | |||| || || |||||| || | ||||| ||||||||| |||| ||| Sbjct 52383 TTGTGCCAATTCCATGGACATTTCCAATGCAGCATAATACATGGTTTCGAAAATTCTTTT 52324 Query 131086 ATTTAATTGTTTCGCTTGGTTGCTCTCGTAAGGAAATTTCATTAAAATAAAAGCGTCTGC 131145 |||||||| ||| || || || || ||| || | | || ||||| | ||| || Sbjct 52323 ATTTAATTCTTTTGCAGAGTCAGATTCATATGGATATCTGAGTAGCATAAAGGTGTCCGC 52264 Query 131146 GAGACCCTGTATCCCAACGCCCACCGGTCTATGTTTTAAATT--ACATTTACGCGAACAT 131203 | ||||||| || | || | ||||| ||| | ||| || | | || | | Sbjct 52263 CAACCCCTGTACTCCTATCCCTATGGGTCTGTGTCTCTTATTGGACCTCTCAGCTTCC-T 52205 Query 131204 TCGGTGGGATAAAGGTTAATGTCAATTATTTTGTTTAAATTGCGCACTACAATTTGTGTG 131263 || ||| | || | || ||||||| | |||||| || | ||||| || Sbjct 52204 TCACAGGGTAGTAATTTCGT-TCGATTATTTGATCTAAATTACGAGTAATAATTTTGGTA 52146 Query 131264 ACGCTTT--TCAAT-TTGTCGAAATCAAACGTGCCAGTTTCGAGGTTTACAAATTGATTT 131320 | ||| | || |||| |||| || | |||| | |||||||||| | Sbjct 52145 A---TTTCGTAAAGCTTGTTAAAATTGAATTCTCTTTTTTCCACATTTACAAATT----T 52093 Query 131321 ACACAT----ATTGACGCCAGATTACAAACTGCCGTTTCGTCATAATCGCAATACTGAAC 131376 |||| || || |||| |||||| || ||| ||| ||| | ||| | || Sbjct 52092 GCACAAGGCGATGGAAGCCAAATTACACACAGCCACTTCATCAGGAGATGTATATTCAAT 52033 Query 131377 AATTTCGGCGCACAAATTACTGCTCTTTATGGTGCCCAAATTTTGTTGATTGCTTTTAGC 131436 ||| || ||||| ||||| | || ||||| |||| ||| | ||||| |||||| Sbjct 52032 AATCTCACAACACAAGTTACTACATTTGATGGTACCCAGATTCTTCTGATTCGATTTAGC 51973 Query 131437 ATTCACATGG-TCCTTGTACATCATGTAGGGCGTGCCCGTTTCGACTTGAGTTTCAATAA 131495 ||| ||| | ||||| |||| |||||| || || ||||| | |||| ||| | || Sbjct 51972 ATT-ACAAGAATCCTTATACAACATGTAAGGAACACCAGTTTCTATTTGACTTTGTAAAA 51914 Query 131496 TGT--ATCGAAAGAGTTTTCGAGCAG-ACAATTGATATTTG----TATTGGCCGCGTTTT 131548 || | | | | | || | ||| || || | ||| |||| | || | Sbjct 51913 TGGCAAACCATAAATCTTGTGC-CAGCACCGTT--TTTTTCCCCATATTTTC----TTCT 51861 Query 131549 TCGTAATTTTCGTACAACGTTTCAAAGTTTTGGCCAAACGAACTGTCCAAATTG-GGACA 131607 || || ||| ||| | |||| || | || || | || || | || ||||| Sbjct 51860 TCATATTTTAAGTAGAGTTTTTCGAATTCTTCTCCCCATGA-CTCACTTAACCCTGGACA 51802 Query 131608 TTCGCTGGGACACATTAGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAACAAATC 131667 ||| | || ||||| || | ||| || | | |||| |||||||||||| || Sbjct 51801 TTCATTTGGGCACATGAGAGTCCAATTTTGATTTTCCTTCACTCTCTTCATAAACAAGTC 51742 Query 131668 CGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCATAAtttt 131727 || ||||| | || || || ||||||| |||| ||||| || |||| ||||| Sbjct 51741 AGGTACCCACACAGCATAAAAAAGATCTCGAGCTCGAAGTTCTTCCTTA-CCATGATTTT 51683 Query 131728 tt-tCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGC 131781 || | |||| |||||| || |||||||| | |||||| ||||| | ||| ||||| Sbjct 51682 TTCTTAAATCTAAAAATTCAAAAATGTCTGAATGCCATGGTTCAATATAAACTGC 51628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424933115635776