Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20fragile_20[genbank_20GCA_5F000956335.1_202015-03-20] 248 sequences; 25,914,542 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq11 168 8e-37 >seq11 Length=477202 Score = 168 bits (186), Expect = 8e-37 Identities = 838/1320 (63%), Gaps = 22/1320 (2%) Strand=Plus/Minus Query 110718 TTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCA 110777 |||||||||| ||||| ||||||| || |||| ||| |||| ||||| || || |||| Sbjct 52606 TTGTGTATGGCTCAAAAGATTCATTGTTGCCCAGGATCTGTGACGTGGAAGCAGTAGGCA 52547 Query 110778 TTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACAT 110837 |||| || | ||| ||| || | | || | | ||| || || ||||||| || Sbjct 52546 TTGGAGCAAGCAAGAGAGAATTCCTCAATCCGTGTTTCTTTATTTGTGCCTTGAGTTTAT 52487 Query 110838 CCCAGTCGTAGTTGAGCTTGGTTTC-ACCTTC-----CCACATGTCAAACTGAAGCACCC 110891 ||||||| | | ||| | || |||||| |||||||||||| ||||| | | Sbjct 52486 CCCAGTCCCAATA---CTTATTATCCACCTTCACATTCCACATGTCAAATTGAAGAATTC 52430 Query 110892 CTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCAC 110951 ||||| || ||| || | | |||||||| | || | ||| |||||||| Sbjct 52429 CTTGGCTAGCTGGACTTCCAGGATACGTTTCATAAGGTCCATACACTTGTGCCAATTCCA 52370 Query 110952 AGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGG 111011 | | |||| | || | |||||||||||| || || | ||| | || || | Sbjct 52369 TGGACATTTCCAATGCAGCATAATACATGGTTTCGAAAATTCTTTTATTTAATTCTTTTG 52310 Query 111012 CTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACAC 111071 | || || ||| ||| || | | | ||||| ||||| | || || || | Sbjct 52309 CAGAGTCAGATTCATATGGATATCTGAGTAGCATAAAGGTGTCCGCCAACCCCTGTACTC 52250 Query 111072 CCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAAT 111131 | | || || |||||||||| | |||| ||| | || || || || || ||| Sbjct 52249 CTATCCCTATGGGTCTGTGTCTCTTATTGGACCTCTCAGCTTCCTTCACAGGGTAGTAAT 52190 Query 111132 TTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTT 111191 ||| || || | | | | || ||| |||| ||| || || ||||| | ||| || | Sbjct 52189 TTCGTTCGATTATTTGATCTAAATTACGAGTAATAATTTTGGTAATTTCGTAAAGCTTGT 52130 Query 111192 CATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGA-AGGGCGATTGATGCCAAA 111250 | ||| || | | || |||| ||| | |||| | | |||||| || |||||| Sbjct 52129 TAAAATTGAATTCTCTTTTTTCCACATTTACA-AATTTGCACAAGGCGATGGAAGCCAAA 52071 Query 111251 TTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAA 111310 || || |||||| ||||| | ||| || || | ||| || ||| ||||| | Sbjct 52070 TTACACACAGCCACTTCATCAGGAGATGTATATTCAATAATCTCACAACACAAGTTACTA 52011 Query 111311 CTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGC 111370 | || || || |||| |||||| || || || || || | |||||| || | | Sbjct 52010 CATTTGATGGTACCCAGATTCTTCTGATTCGATTTAGCATTACAAGAATCCTTATACAAC 51951 Query 111371 ATGTAGGGCGTCCCCGTCTCCGTCTGTGA-TTTG-AGAATAGCCTTCCAAACATCGGCGG 111428 ||||| || || || || | | ||| |||| | ||| || ||| | ||| | Sbjct 51950 ATGTAAGGAACACCAGTTTC--TATTTGACTTTGTAAAATGGCAAACCATAAATCTTGTG 51893 Query 111429 CTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACT 111488 | | || | || || || | || || ||| |||||| ||| || | Sbjct 51892 CCAGCACCGTTTTTTTCCCCATATTTTCTTCTTCATATTTTAAGTAGAGTTTTTCGAATT 51833 Query 111489 CCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGAC 111548 | || ||| | || | ||||| | | ||| || | |||| ||| | Sbjct 51832 CTTCTCCCCATGACTCACTTAACCCTGGACATTCATTTGGGCACATGAGAGTCCAATTTT 51773 Query 111549 CACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTC 111608 | ||||| || | |||||| || | ||| || | ||||| | |||| ||||||| Sbjct 51772 GATTTTCCTTCACTCTCTTCATAAACAAGTCAGGTACCCACACAGCATAAAAAAGATCTC 51713 Query 111609 TACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCG 111668 | ||| ||||| | ||| || || || ||| || | || || | || || | Sbjct 51712 GAGCTCGAAGTTCTTCCTTACCATGATTTTTTCTTAAATCTAAAAATTCAAAAATGTCTG 51653 Query 111669 CGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTC---GACGCCCAGCTTGATTTA 111725 |||||||| |||| ||| ||||| | ||| ||||||| | || |||||| | Sbjct 51652 AATGCCATGGTTCAATATAAACTGCAAAAGACCCCTTTCTCTTTCCTCCTCCTTGATCCA 51593 Query 111726 CATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCAT 111785 |||| | ||||| | |||||||| | ||||||||| | | |||| ||| |||| Sbjct 51592 CATACCTAGCTGTATCATTAAATACCCTAAGCATTGGTACTAGCCCATTGGATATTCCAT 51533 Query 111786 TTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGC-ATCCCAATACCC 111844 |||| || | |||| || || | |||| | ||| || | ||| | || || || Sbjct 51532 TTGTTCCTCTAATATATGAATTTTGTCCTCTAATATCTTGTA-CTGCTACTCCTATCCCA 51474 Query 111845 CCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAG 111904 ||||| ||| ||| |||||| | | | || ||| || | ||||| | || ||| Sbjct 51473 CCAGCTGTCTTGCTAATTAACGCACATTGCTTTAGTGTTTCAAATATACCTTCAATCGAG 51414 Query 111905 TCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTG 111964 || || || || || || || ||||| || || || || ||||||| |||| Sbjct 51413 TCAGATTTCATGCAGAGGAGAAAACAGGAAGACATTTGTGGCCTGGGCGTACCAGAATTG 51354 Query 111965 AAGAGGGTTGGTGTTGCGTGAATGAACATAC-CTTGGGACATCTTGTCGTATGTCTCCAA 112023 || | ||| ||||| || || |||| |||| ||| |||||| | ||||||||| || Sbjct 51353 AACAAGGTAGGTGTAGCATGTGTGAA-ATACTTTTGTGACATCAAATGGTATGTCTCTAA 51295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628030053100800