Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20fragile_20[genbank_20GCA_5F000956335.1_202015-03-20] 248 sequences; 25,914,542 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq11 174 2e-38 >seq11 Length=477202 Score = 174 bits (192), Expect = 2e-38 Identities = 848/1332 (64%), Gaps = 24/1332 (2%) Strand=Plus/Plus Query 104282 TTGGAGACATACGACAAGATGTCCCAAG-GTATGTTCATTCACGCAACACCAACCCTCTT 104340 || ||||||||| | |||||| ||| |||| |||| || || ||||| ||| | || Sbjct 51295 TTAGAGACATACCATTTGATGTCACAAAAGTAT-TTCACACATGCTACACCTACCTTGTT 51353 Query 104341 CAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 104400 |||| ||||||| || || || |||||||| || || || || || || || Sbjct 51354 CAATTCTGGTACGCCCAGGCCACAAATGTCTTCCTGTTTTCTCCTCTGCATGAAATCTGA 51413 Query 104401 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 104460 ||| || | ||||| | || ||| || | | | |||||| ||| ||| ||||| Sbjct 51414 CTCGATTGAAGGTATATTTGAAACACTAAAGCAATGTGCGTTAATTAGCAAGACAGCTGG 51473 Query 104461 GGGTATTGGGAT-GCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAA 104519 || || || | ||| | || ||| | |||| | || || |||| | || |||| Sbjct 51474 TGGGATAGGAGTAGCAG-TACAAGATATTAGAGGACAAAATTCATATATTAGAGGAACAA 51532 Query 104520 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 104579 |||| ||| |||| | | ||||||||| | |||||||| | ||||| | |||| Sbjct 51533 ATGGAATATCCAATGGGCTAGTACCAATGCTTAGGGTATTTAATGATACAGCTAGGTATG 51592 Query 104580 TAAATCAAGCTGGGCGTC---GAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACG 104636 | |||||| || | ||||||| ||| | ||||| ||| |||| |||||||| Sbjct 51593 TGGATCAAGGAGGAGGAAAGAGAAAGGGGTCTTTTGCAGTTTATATTGAACCATGGCATT 51652 Query 104637 CGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGCC 104696 | || || | || || | || || | || || ||| | || || || | Sbjct 51653 CAGACATTTTTGAATTTTTAGATTTAAGAAAAAATCATGGTAAGGAAGAACTTCGAGCTC 51712 Query 104697 GCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTG 104756 | ||||| || | ||| | ||| | || || | || ||||||||||| |||| | | Sbjct 51713 GAGATCTTTTTTATGCTGTGTGGGTACCTGACTTGTTTATGAAGAGAGTGAAGGAAAATC 51772 Query 104757 GCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTGAGG 104816 |||||| ||||| | || ||| | | || || | || | ||| || | Sbjct 51773 AAAATTGGACTCTCATGTGCCCAAATGAATGTCCAGGGTTAAGTGAGTCATGGGGAGAAG 51832 Query 104817 AGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGGTGCCAG 104876 | || ||| || ||| ||| || || |||||| | || || ||||||| | Sbjct 51833 AATTCGAAAAACTCTACTTAAAATATGAAGAAGAAAATATGGGGAAAAAAACGGTGCTGG 51892 Query 104877 CTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGC 104936 | ||| | ||| || ||| | | ||||| || |||||| || |||||| Sbjct 51893 CACAAGATTTATGGTTTGCCATTTTACAAAGTCAAATAGAAACTGGTGTTCCTTACATGT 51952 Query 104937 TTTACAAAGACGCCTGTAA-CCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGT 104995 | || || || | ||||| | ||| | ||||| |||||| ||||| ||||| || Sbjct 51953 TGTATAAGGATTCTTGTAATGCTAAATCG-AATCAGAAGAATCTGGGTACCATCAAATGT 52011 Query 104996 TCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAAC 105055 || | ||| || || | |||| |||| ||||| |||||||||||| Sbjct 52012 AGTAACTTGTGTTGTGAGATTATTGAATATACATCTCCTGATGAAGTGGCTGTGTGTAAT 52071 Query 105056 CTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGA-CATTTGATTATGA 105114 | || || ||||| | ||| | ||| || || | ||||| ||| ||| | | Sbjct 52072 TTGGCTTCCATCGCCTTGTGCAAATTTGTAAATGTGGA-AAAAAGAGAATTCAATTTTAA 52130 Query 105115 AAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAAA 105174 || || ||||| |||| |||| | | || || || | | | || || |||| Sbjct 52131 CAAGCTTTACGAAATTACCAAAATTATTACTCGTAATTTAGATCAAATAATCGAACGAAA 52190 Query 105175 TTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGG 105234 || ||||| || || ||| | || |||| ||||||| | || || || | || Sbjct 52191 TTACTACCCTGTGAAGGAAGCTGAGAGGTCCAATAAGAGACACAGACCCATAGGGATAGG 52250 Query 105235 TGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGACGAAGC 105294 || ||||| | ||||| || || || | | ||| ||| || ||| || Sbjct 52251 AGTACAGGGGTTGGCGGACACCTTTATGCTACTCAGATATCCATATGAATCTGACTCTGC 52310 Query 105295 GAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGGCGAGTTC 105354 || ||| | ||| | || || || ||||||||| | || || ||| | || | Sbjct 52311 AAAAGAATTAAATAAAAGAATTTTCGAAACCATGTATTATGCTGC-ATTG-GAAATGTCC 52368 Query 105355 A--GAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAA 105412 | || |||||| | || |||| || |||||||| | | || ||||||| ||| Sbjct 52369 ATGGAATTGGCACAAGTGTATGGACCTTATGAAACGTATCCTGGAAGTCCAGCTAGCCAA 52428 Query 105413 GGGGTGCTTCAATTTGATATGTGG-----GAAGGT-GAGACCAAGCTTCACTACGACTGG 105466 || | ||||||||||| |||||| |||||| || | ||| | | |||||| Sbjct 52429 GGAATTCTTCAATTTGACATGTGGAATGTGAAGGTGGATAATAAG---TATTGGGACTGG 52485 Query 105467 GAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCCA 105526 || ||||||| || || ||| | | || | | || |||| | | |||||| Sbjct 52486 GATAAACTCAAGGCACAAATAAAGAAACACGGATTGAGGAATTCTCTCTTGCTTGCTCCA 52545 Query 105527 ATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACG 105586 ||||| || || ||||| |||| ||| |||| || ||||||| ||||| || ||||| Sbjct 52546 ATGCCTACTGCTTCCACGTCACAGATCCTGGGCAACAATGAATCTTTTGAGCCATACACA 52605 Query 105587 ACGAACATCTAT 105598 | || || ||| Sbjct 52606 AGTAATATTTAT 52617 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583258991891520