Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20fragile_20[genbank_20GCA_5F000956335.1_202015-03-20] 248 sequences; 25,914,542 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq16 98.7 1e-15 >seq16 Length=409614 Score = 98.7 bits (108), Expect = 1e-15 Identities = 286/433 (66%), Gaps = 18/433 (4%) Strand=Plus/Minus Query 74462 ATAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCAT 74521 |||||| | ||||||||||| ||||||||||| || || | ||| || ||| ||||| Sbjct 248354 ATAATCGGCCACCCGCTTTTCGAAAAAGTTGGTTTTGCCCTGCAAAGATATGAGGTCCAT 248295 Query 74522 CCAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTC----TCCCCAAACTGTGCCATGA 74577 ||||| ||| || ||||||||| | || | ||| ||||| || | ||| | Sbjct 248294 CCAGTTGAATGGATTCTTTGCA---TGAAAAATTTTCGAAGACCCCAGACACT-CCAACA 248239 Query 74578 GGCGATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTT 74637 | | |||||||| |||| ||||||||||| ||| | | | ||| || || | | Sbjct 248238 GTCTGTCCGCCACGAATTCAATGTACTGCGACATGAGCCTTGAGTTCATTCCAATCAAAT 248179 Query 74638 TGCACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTGGACAATCT 74697 || |||| | ||| ||||| | ||||||||| ||| || |||||| | Sbjct 248178 CACAAGGCAAAGATTCGCAAATAAAAGAGCGCTCCACCTCTACGGCCTCTTTGACAATAT 248119 Query 74698 TGTGA-----ATGTCTTTGGAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGCGTCACGGC 74752 | ||| |||| | || || | ||||| |||| | | || | | || Sbjct 248118 TCTGAACCACATGT-TCAGGCAGCTTA-TTTTCGAGCAGGCTATA--AATGAGGCA-ATT 248064 Query 74753 AAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGG 74812 ||| || ||| | |||||||||| || || || ||||| || | |||||| | Sbjct 248063 AAAATCTGTGTGCAATCCTTCATCTCGACTAATTAACTCATTACTGAAAGTCAGGCCATG 248004 Query 74813 CATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCC 74872 || | ||||| ||||||||||| ||||||||| ||||| || || ||||| Sbjct 248003 CAACTTGTTTTGTTTCTTAAACCAAAAGATAGCACAGAAGCTTCCACTAAATAAAATGCC 247944 Query 74873 TTCGACACACGCA 74885 |||||||| ||| Sbjct 247943 CTCGACACAAGCA 247931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547214303630400