Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20fragile_20[genbank_20GCA_5F000956335.1_202015-03-20] 248 sequences; 25,914,542 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq23 91.5 1e-13 >seq23 Length=358523 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/212 (70%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| ||||| |||||||| | | ||| | | || || || || ||||| || ||| Sbjct 176832 ATGCAAATATTCGTAAAAACATTAAGCGGAAGAACCATCACCCTGGATGTGGAGCCATCC 176773 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||| || || ||| ||||||| || | || || || | ||||| || || Sbjct 176772 GAAACCATTAGGAATGTTAAATCAAAAATTGAACATAAGGACGGAGTCCCACCTGACCAG 176713 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGA---CAGTTCGACCGTTTCCGATTAC 27164 ||| | ||||||| | || ||||||||||| || ||| | || | || ||| Sbjct 176712 CAGAGGCTAATATATTCAGGAAAACAATTGGAGGATGTCAG---GTTTGTGGCTGACTAC 176656 Query 27165 AACATTCAAAAGGAGTCGACCTTACATTTGGT 27196 ||||| || |||||||| ||||| || ||||| Sbjct 176655 AACATCCAGAAGGAGTCCACCTTGCACTTGGT 176624 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434917051752960