Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20fragile_20[genbank_20GCA_5F000956335.1_202015-03-20] 248 sequences; 25,914,542 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq79 84.2 5e-11 >seq79 Length=97216 Score = 84.2 bits (92), Expect = 5e-11 Identities = 125/175 (71%), Gaps = 2/175 (1%) Strand=Plus/Plus Query 139806 CCTTCCAAAGAAGCACGGAAGAGGAGGACAATCTGCTCTGCGTTTTGAAAGACTTCGAAA 139865 ||| ||||||||||| ||||||||||| ||| ||| | ||||||| | || ||| Sbjct 47224 CCTACCAAAGAAGCATGGAAGAGGAGGTCAAAGTGCGTTACGTTTTGCTCGTCTGCGATT 47283 Query 139866 GGAAAAGAGGCACAACTACTTGAGAAAAGTTGCAGAGAACGCAATA-CAGTGTTTTATCA 139924 |||||||| || || || || |||||||| ||||| || | | | || |||||| | Sbjct 47284 AGAAAAGAGACATAATTATTTAAGAAAAGTGGCAGAAGTGGCTACATCTGT-TTTTATAA 47342 Query 139925 AAGACAACAAGTGTTTTGTTTCTGGTATTGTTTTGGCAGGTTCCGCAGAGTTCAA 139979 | | |||| | ||||||||||||||| | || || ||||| ||||| Sbjct 47343 CAAATGACAAAATTAATGTTTCTGGTATTGTGCTTGCTGGAAGTGCAGACTTCAA 47397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159148316794520