Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20fragile_20[genbank_20GCA_5F000956335.1_202015-03-20] 248 sequences; 25,914,542 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq16 109 5e-19 >seq16 Length=409614 Score = 109 bits (120), Expect = 5e-19 Identities = 247/369 (67%), Gaps = 2/369 (1%) Strand=Plus/Minus Query 4722 TCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATA 4781 || || |||||||| |||||| ||||| ||||| || ||||| | | ||| Sbjct 247897 TCGTTGATCCATTTGGCTGCCCACAACGCTTTGTTCTTCACAGCTGGAATATTTTCAATA 247838 Query 4782 GCGTTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTA 4841 || | ||| || || || | || ||| | || || |||| |||| || ||| Sbjct 247837 GCATGAAACAAATTCATTCTCTCCTTCTCGTCCTTTATGTAGTTGTCAATTAATAAGCTG 247778 Query 4842 TACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCT 4901 ||| | || || || |||||||| | || || || || |||||| | ||||| Sbjct 247777 TACGTCTCCGAGTGAATATTTTCAACTGCTATTTGGAAGGAGTAAAATTTCTTTGCTTCC 247718 Query 4902 GTTACTTGAACTTCGTTACAAAATCTTTCTA-CTAAGTTTTCGTTTACTATACCGTCACT 4960 |||| ||| |||| | ||||| || || |||| ||||| ||| || || ||||| Sbjct 247717 GTTATTTGCACTTGGCGTAAAAAT-TTGCTCGCTAAATTTTCCAATACAATTCCATCACT 247659 Query 4961 GGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTT 5020 |||||||||||| ||||| ||||| ||||| | | ||| | || | ||||| Sbjct 247658 GGCTGCAAAAAAAGCCAACACATGTTTAATAAAATGTTTTTCATTTTCATTTAATTTTTC 247599 Query 5021 CCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGC 5080 | | ||||| ||| || |||| ||| ||| | ||||| || ||||||||||| Sbjct 247598 GAAATCTTTTAAATCGCTAGACAAGTCAATTTCCTCAGCTGTCCAGAAGGACGCTTCCGC 247539 Query 5081 TTTTTTGTA 5089 |||||| || Sbjct 247538 TTTTTTATA 247530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427048309242584