Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20fragile_20[genbank_20GCA_5F000956335.1_202015-03-20] 248 sequences; 25,914,542 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq11 284 2e-71 seq16 143 4e-29 >seq11 Length=477202 Score = 284 bits (314), Expect = 2e-71 Identities = 987/1519 (65%), Gaps = 41/1519 (3%) Strand=Plus/Minus Query 77104 TAAGGAGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATAT 77163 |||| || || || || |||| || |||||| ||| || || | | ||||||| Sbjct 52669 TAAGTAGGTGGGGGTTCACTACAAAGAACTCTCCACTCAACACCCTCCTATAATAAATAT 52610 Query 77164 TACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTG 77223 |||| || ||||| || | |||||||||||| |||| || || | || |||||||| | Sbjct 52609 TACTTGTGTATGGCTCAAAAGATTCATTGTTGCCCAGGATCTGTGACGTGGAAGCAGTAG 52550 Query 77224 GCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGAT 77283 |||| || || | ||| | | ||| || | || ||| | | |||| | || || | Sbjct 52549 GCATTGGAGCAAGCAAGAGAGAATTCCTCAATCCGTGTTTCTTTATTTGTGCCTTGAGTT 52490 Query 77284 ATTTCCAATCCCAA-AGATCTGA---AGGTACAACATCCCAAAGATCGTATTGTAGAATT 77339 | ||| |||||| | | | | | | || ||| ||| | || |||| |||||| Sbjct 52489 TATCCCAGTCCCAATACTTATTATCCACCTTCA-CATTCCACATGTCAAATTGAAGAATT 52431 Query 77340 CCGTTACTAGCATATGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCA 77399 || | ||||| |||| ||| |||||||||||||| | || || | ||| Sbjct 52430 CCTTGGCTAGCTGGACTTCCAGGATACGTTTCATAAGGTCCATACACTTGTGCCAATTCC 52371 Query 77400 CAACTCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGT 77459 | ||||||||| | ||||| || ||||||||||| | ||||| | |||| | Sbjct 52370 ATGGACATTTCCAATGCAGCATAATACATGGTTTCGAAAATTCTTTTATTTAATTCTTTT 52311 Query 77460 GCT---TCA-ATACTATCAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTG 77515 || ||| || ||| | ||||| | || ||||||| || || || ||||| Sbjct 52310 GCAGAGTCAGAT----TCATATGGATATCTGAGTAGCATAAAGGTGTCCGCCAACCCCTG 52255 Query 77516 AACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATA 77575 ||||| || || || ||||| |||||||||||||| | | |||||| | ||| || Sbjct 52254 TACTCCTATCCCTATGGGTCTGTGTCTCTTATTGGACCTCTCAGCTTCCTTCACAGGGTA 52195 Query 77576 ATAATTAATGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAG 77635 ||||| || || |||| || | ||| | | || | ||| | || | || Sbjct 52194 GTAATTTCGTTCGATTATTTGATCTAAATTACGAGTAATAATTTTGGTAATTTCGTAAAG 52135 Query 77636 TTTAAGAAAATCAAAT---CTTCCATCTATA---ACAAACATGTTCAAAGCTATAGATGC 77689 || ||||| ||| ||| || | | ||||| || ||| || || || || Sbjct 52134 CTTGTTAAAATTGAATTCTCTTTTTTCCACATTTACAAATTTGCACAAGGCGATGGAAGC 52075 Query 77690 TAGATTACAAACTGCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATT 77749 | |||||| || || || |||| || | ||||| || ||||| ||| | || Sbjct 52074 CAAATTACACACAGCCACTTCATCAGGAGATGTATATTCAATAATCTCACAACACAAGTT 52015 Query 77750 ACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATA 77809 |||||||||||| || |||||||| | || || || ||| || || |||||||| Sbjct 52014 ACTACATTTGATGGTACCCAGATTCTTCTGATTCGATTTAGCATTACAAGAATCCTTATA 51955 Query 77810 AAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCT 77869 | || | ||| || ||||| || || || | ||| | ||| | | ||| Sbjct 51954 CAACATGTAAGGAACACCAGTTTCTATTTGACTTTGTAAAATGGCAAACCATA--AATCT 51897 Query 77870 AGCTTTTATCATAGATTTGTATCGCC----TCTCTCTTTCATATTGAGTATATAGCCGTT 77925 | | | || | ||| | || || | ||| |||||||| || || || Sbjct 51896 TG-TGCCAGCACCGTTTTTT-TCCCCATATTTTCTTCTTCATATTTTAAGTAGAGTTTTT 51839 Query 77926 CAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACC 77985 | ||||| |||||||| ||| || || || ||||||||||||||||| | | || Sbjct 51838 CGAATTCTTCTCCCCATGACTCACTTAACCCTGGACATTCATTTGGGCACATGAGAGTCC 51779 Query 77986 AGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATA 78045 | | || |||||| |||| |||||||| | ||||||| ||| | |||| ||| | Sbjct 51778 AATTTTGATTTTCCTTCACTCTCTTCATAAACAAGTCAGGTACCCACACAGCATAAAAAA 51719 Query 78046 GATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAA 78105 ||||||| | || | ||||||| || || ||| ||| | | ||| | ||| || | || Sbjct 51718 GATCTCGAGCTCGAAGTTCTTCCTTACCATGATTTTTTCTTAAATCTAAAAATTCAAAAA 51659 Query 78106 TATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCT 78165 | || |||||||||||||| | ||| | ||| | | || || || ||||| | Sbjct 51658 TGTCTGAATGCCATGGTTCAATATAAACTGCAAAAGACCCCTTTCTCTTTCCTCCTCCTT 51599 Query 78166 GATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATG 78225 |||| | ||| || || || | |||| | || || | |||||| | | || || ||| Sbjct 51598 GATCCACATACCTAGCTGTATCATTAAATACCCTAAGCATTGGTACTAGCCCATTGGATA 51539 Query 78226 TTCCATTTGTTCCAGAAATATA--ACTTCCACTTG--CGCGAATAT-TACTAATGGATAT 78280 ||||||||||||| |||||| | || ||| | | ||||| | || | | || Sbjct 51538 TTCCATTTGTTCCTCTAATATATGAATT----TTGTCCTCTAATATCTTGTACT-GCTAC 51484 Query 78281 CCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACC 78340 ||||| || || || |||| |||| || || | || | ||| || | ||||| Sbjct 51483 TCCTATCCCACCAGCTGTCTTGCTAATTAACGCACATTGCTTTAGTGTTTCAAATATACC 51424 Query 78341 CTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATG-ATGAACAG 78399 || || |||| ||||| || ||||||||| ||||||||| | || | | Sbjct 51423 TTCAATCGAGTCAGATTTCATGCAGAGGAGAAAACAGGAAGACATTTGTGGCCTGGGC-G 51365 Query 78400 TTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGT 78459 | || | ||| || || || || | ||||| || || | |||| || | | || || Sbjct 51364 TACCAGAATTGAACAAGGTAGGTGTAGCATGTGTGAAATACTTTTGTGACATCAAATGGT 51305 Query 78460 ATGTTTCAATAGCTGATTCTATGTC-CCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 |||| || | || ||| | || ||| || || || || | || ||| | ||||| | Sbjct 51304 ATGTCTCTAATGCCTTTTCCAAATCACCAATG-TGGATCCCAATCGATACTCTCATCAGC 51246 Query 78519 ATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAA 78578 | ||| || |||| |||| | || ||| || | | |||||| |||| ||| Sbjct 51245 AGATGTTGTGGTCGCTCAATTATTTTTCCATTAATACGAAGGAGGTATGACCTTTCTAAA 51186 Query 78579 GTTTTAAAACCAAAATAGT 78597 || || || |||||||||| Sbjct 51185 GTCTTGAATCCAAAATAGT 51167 >seq16 Length=409614 Score = 143 bits (158), Expect = 4e-29 Identities = 244/351 (70%), Gaps = 2/351 (1%) Strand=Plus/Minus Query 48339 GCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATTG 48398 || || ||||| ||| || || |||| ||||||| ||| | | || | || || Sbjct 247870 GCTTTGTTCTTCACAGCTGGAATATTTTCAATAGCATGAAACAAATTCATTCTCTCCTTC 247811 Query 48399 CTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATT 48458 || || | ||| | || ||||| | || ||| | || |||||||||||||||| | Sbjct 247810 TCGTCCTTTATGTAGTTGTCAATTAATAAGCTGTACGTCTCCGAGTGAATATTTTCAACT 247751 Query 48459 GCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTC-CGTACAAAATCG 48517 || || || || |||||| | ||||| || || || || | |||| ||| | | Sbjct 247750 GCTATTTGGAAGGAGTAAAATTTCTTTGCTTCCGTTATTTGCACTTGGCGTAAAAATTTG 247691 Query 48518 TTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTT 48577 || || ||||| || ||| ||||||||||| || |||||||| || || |||||||| Sbjct 247690 CTC-GCTAAATTTTCCAATACAATTCCATCACTGGCTGCAAAAAAAGCCAACACATGTTT 247632 Query 48578 AATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATC 48637 |||||||| |||||| || | | | ||| | | || || | ||| | || | || Sbjct 247631 AATAAAATGTTTTTCATTTTCATTTAATTTTTCGAAATCTTTTAAATCGCTAGACAAGTC 247572 Query 48638 TACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCA 48688 | ||| ||||||||||| || || || || ||||||||||| | || ||| Sbjct 247571 AATTTCCTCAGCTGTCCAGAAGGACGCTTCCGCTTTTTTATAAAAATCCCA 247521 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694666646526720