Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20fragile_20[genbank_20GCA_5F000956335.1_202015-03-20] 248 sequences; 25,914,542 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq11 251 1e-61 seq16 132 7e-26 >seq11 Length=477202 Score = 251 bits (278), Expect = 1e-61 Identities = 1000/1549 (65%), Gaps = 45/1549 (3%) Strand=Plus/Minus Query 75725 AATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCA 75784 || |||||| ||| || || | | ||||||||||| || ||||| || | ||||||| Sbjct 52643 AACTCTCCACTCAACACCCTCCTATAATAAATATTACTTGTGTATGGCTCAAAAGATTCA 52584 Query 75785 TTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTATTT 75844 ||||| |||| || || | || |||||||| ||||| || || | ||| | | ||| Sbjct 52583 TTGTTGCCCAGGATCTGTGACGTGGAAGCAGTAGGCATTGGAGCAAGCAAGAGAGAATTC 52524 Query 75845 CTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGATGGT 75904 || | || ||| | | |||| | || || | | ||| |||||| || || | Sbjct 52523 CTCAATCCGTGTTTCTTTATTTGTGCCTTGAGTTTATCCCAGTCCCAATA--CTTATTAT 52466 Query 75905 ACA-----ACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGCATATGATCCATTAT 75959 || |||| ||| | || |||| |||||||| | |||||| |||| || Sbjct 52465 CCACCTTCACATTCCACATGTCAAATTGAAGAATTCCTTGGCTAGCTGGACTTCCAGGAT 52406 Query 75960 ATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCC---TCTAACGCACCGT 76016 | ||||| |||| || | | || || | ||| || | | | || || ||| | | Sbjct 52405 ACGTTTCATAAGGTCCATACACTTGTGCCAATTC-CA--TGGACATTTCCAATGCAGCAT 52349 Query 76017 AATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCT---TCAAGACTATCAAAAG 76073 |||| || ||||||||||| | ||||| | |||| || ||| || | || | | Sbjct 52348 AATACATGGTTTCGAAAATTCTTTTATTTAATTCTTTTGCAGAGTCA-GATT--CATATG 52292 Query 76074 GATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTAT 76133 |||| | || ||||| | || || | ||||| ||||| || || || ||||| | Sbjct 52291 GATATCTGAGTAGCATAAAGGTGTCCGCCAACCCCTGTACTCCTATCCCTATGGGTCTGT 52232 Query 76134 GTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTAT 76193 ||||||||||||| | |||||||| | |||||| ||||| || || |||| || Sbjct 52231 GTCTCTTATTGGACCTCTCAGCTTCCTTCACAGGGTAGTAATTTCGTTCGATTATTTGAT 52172 Query 76194 TGAGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATTTTCCAT 76253 | ||| | || | ||| | || | || ||| ||||| |||| || | Sbjct 52171 CTAAATTACGAGTAATAATTTTGGTAATTTCGTAAAGCTTGTTAAAATTGAATTCTCTTT 52112 Query 76254 CTATCACAA--ACATATT-----AAGAGCTATAGATGCTAGATTACAAACGGCTACCTCA 76306 | |||| ||| ||| ||| || || || || | |||||| || || || ||| Sbjct 52111 TTTCCACATTTACAAATTTGCACAAG-GCGATGGAAGCCAAATTACACACAGCCACTTCA 52053 Query 76307 TTAGCATTGGCATATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGA 76366 | || | | ||||| || ||||| || | |||||||| ||||| || || ||| Sbjct 52052 TCAGGAGATGTATATTCAATAATCTCACAACACAAGTTACTACATTTGATGGTACCCAGA 51993 Query 76367 TTTTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTT 76426 || | || || || ||||| || |||||||| | | | ||| |||||| Sbjct 51992 TTCTTCTGATTCGATTTAGCATTACAAGAATCCTTATACAACATGTAAGGAACACCAGTT 51933 Query 76427 TCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATTATAGATTTGTAT 76486 || || || || | ||| | ||| | | ||| | | | | | ||| | Sbjct 51932 TCTATTTGACTTTGTAAAATGGCAAACCATA--AATCTTG-TGCCAGCACCGTTTTTTTC 51876 Query 76487 CGC---TTCTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCA 76543 | | || ||| |||||||| | || | ||| ||||| |||||||| ||| Sbjct 51875 CCCATATTTTCTTCTTCATATTTTAAGTAGAGTTTTTCGAATTCTTCTCCCCATGACTCA 51816 Query 76544 TCCAAACCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGT 76603 || || ||||||||||| || ||||| | | ||| | || |||||| || | Sbjct 51815 CTTAACCCTGGACATTCATTTGGGCACATGAGAGTCCAATTTTGATTTTCCTTCACTCTC 51756 Query 76604 TTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCA 76663 |||||||| | ||||||| ||| | |||| ||| |||||||| | || | ||||||| Sbjct 51755 TTCATAAACAAGTCAGGTACCCACACAGCATAAAAAAGATCTCGAGCTCGAAGTTCTTCC 51696 Query 76664 TTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGA 76723 || || ||| ||| | | ||||| || || | ||| || |||||||||||||| | | Sbjct 51695 TTACCATGATTTTTTCTTAAATCTAAAAATTCAAAAATGTCTGAATGCCATGGTTCAATA 51636 Query 76724 TATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTA 76783 || | || | | ||| || || ||||| ||||| | ||| || || || | | Sbjct 51635 TAAACTGCAAAAGACCCCTTTCTCTTTCCTCCTCCTTGATCCACATACCTAGCTGTATCA 51576 Query 76784 TTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATA- 76842 ||| | || || | |||||| | | || || ||| | ||||||||||| |||||| Sbjct 51575 TTAAATACCCTAAGCATTGGTACTAGCCCATTGGATATTCCATTTGTTCCTCTAATATAT 51516 Query 76843 -ACTTCCACATGCACGAATAT-TACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAG 76900 | || | | | ||||| | || | | || ||||| || || || | || Sbjct 51515 GAATT--TTGTCCTCTAATATCTTGTACT-GCTACTCCTATCCCACCAGCTGTCTTGCTA 51459 Query 76901 ATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTA 76960 |||| ||||| | || | ||| ||| | || || || || ||| ||||| Sbjct 51458 ATTAACGCACATTGCTTTAGTGTTTCAAATATACCTTCAATCGAGTCAGATTTCATGCAG 51399 Query 76961 AGAAGAAAACAGCTAGACATTTGATG-ATGAACAGTTCCTGCATTAAACAATGTAGGAGA 77019 || ||||||||| ||||||||| | || | || || | ||| ||||| ||||| | Sbjct 51398 AGGAGAAAACAGGAAGACATTTGTGGCCTGGGC-GTACCAGAATTGAACAAGGTAGGTGT 51340 Query 77020 TGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTC-AATAACTGCTTCTATAT 77078 ||||| ||||| | |||| || | | || |||||| || ||| || ||| | || Sbjct 51339 AGCATGTGTGAAATACTTTTGTGACATCAAATGGTATGTCTCTAATGCCT-TTTCCAAAT 51281 Query 77079 C-CCATTGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTC 77137 | ||| || || || || | | || | ||||| || ||| || ||||| || | | Sbjct 51280 CACCAATG-TGGATCCCAATCGATACTCTCATCAGCAGATGTTGTGGTCGCTCAATTATT 51222 Query 77138 TTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTAT 77197 || ||| || | | |||||| |||| ||||| || || |||||||||| || Sbjct 51221 TTTCCATTAATACGAAGGAGGTATGACCTTTCTAAAGTCTTGAATCCAAAATAGTCATAG 51162 Query 77198 GAAAAGTCTCTTTCGTAAATAATAACCGAATTTAGTTTGTCCTTATATT 77246 ||| |||| | |||| || || || ||| ||||||||| || Sbjct 51161 TTAAAATCTCGTGTGTAATCGATTTCCTTGTTCAGTCTGTCCTTATGTT 51113 >seq16 Length=409614 Score = 132 bits (146), Expect = 7e-26 Identities = 355/534 (66%), Gaps = 14/534 (3%) Strand=Plus/Minus Query 46651 CCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCAT-TAGTCCACGCTT 46709 |||||||||| ||||||||| || ||| || || || ||| ||| | || | || Sbjct 248047 CCTTCATCTCGACTAATTAACTCATTACTGAAAGTCAGGCCATGCAACTTGTTTT-GTTT 247989 Query 46710 TTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAA 46769 || | |||||| ||||| ||| |||| ||| || ||||| || ||| || Sbjct 247988 CTTAAACCAAAAGATAGCACAGAAGCTTCCACTAAATAAAATGCCCTCGACACAAGCATT 247929 Query 46770 TGCGACAAGTCTCTCTCC---GTAACTGGCATCATTATGAATCCACCTTTGA--GCCCAA 46824 ||| || | || ||| | | | | | ||| || ||||| |||| ||||| Sbjct 247928 TGCTACTATCCTTTCTGCAAAGGAGTTTGTATCGTTG---ATCCA--TTTGGCTGCCCAC 247874 Query 46825 TCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGtttttttCA 46884 || || ||||| ||| || || |||| ||||||| ||| | | || | || Sbjct 247873 AACGCTTTGTTCTTCACAGCTGGAATATTTTCAATAGCATGAAACAAATTCATTCTCTCC 247814 Query 46885 TCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCA 46944 | || || | || | || ||||| | || ||| | || || ||||| |||||| Sbjct 247813 TTCTCGTCCTTTATGTAGTTGTCAATTAATAAGCTGTACGTCTCCGAGTGAATATTTTCA 247754 Query 46945 ATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCT-GTACAAAA 47003 | || || || || |||||| ||||||| || || || || | ||| ||| Sbjct 247753 ACTGCTATTTGGAAGGAGTAAAATTTCTTTGCTTCCGTTATTTGCACTTGGCGTAAAAAT 247694 Query 47004 TCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATG 47063 | | || | ||||| || || ||||||||||| || |||||||| ||||| ||||| Sbjct 247693 TTGCTC-GCTAAATTTTCCAATACAATTCCATCACTGGCTGCAAAAAAAGCCAACACATG 247635 Query 47064 TTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATATCTTTTGATAT 47123 ||||||||||| |||||||| | | | ||| | | || || | ||| | || | Sbjct 247634 TTTAATAAAATGTTTTTCATTTTCATTTAATTTTTCGAAATCTTTTAAATCGCTAGACAA 247575 Query 47124 ATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCA 47177 || | ||| |||||||||||||| ||||| || ||||||||||| | || ||| Sbjct 247574 GTCAATTTCCTCAGCTGTCCAGAAGGACGCTTCCGCTTTTTTATAAAAATCCCA 247521 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712932189903360