Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20fragile_20[genbank_20GCA_5F000956335.1_202015-03-20] 248 sequences; 25,914,542 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq15 174 2e-38 seq16 113 5e-20 >seq15 Length=432089 Score = 174 bits (192), Expect = 2e-38 Identities = 123/141 (87%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 8344 TCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCG 8403 |||| |||||| |||||||||||||||||||||| |||||| ||||||||||| ||||| Sbjct 260786 TCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGCGATCTCGGCTCACTGCAAGCTCCG 260845 Query 8404 CCTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAA 8463 ||||||||||||| || |||||||||||||||||||| |||||||||||| ||||||| Sbjct 260846 CCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGC 260905 Query 8464 AAGCCACCACGCCAAGCTAAT 8484 ||||| |||| |||||| Sbjct 260906 CCACCACCGCGCCCGGCTAAT 260926 >seq16 Length=409614 Score = 113 bits (124), Expect = 5e-20 Identities = 179/255 (70%), Gaps = 4/255 (2%) Strand=Plus/Minus Query 23777 TTATATATGTATCAATTAGTAAACTATACATTTCAGAATGAATATTTTCAATAGCAATCT 23836 |||| || | ||||||| ||| || ||| | || || ||||||||||||| || || | Sbjct 247803 TTATGTAGTTGTCAATTAATAAGCTGTACGTCTCCGAGTGAATATTTTCAACTGCTATTT 247744 Query 23837 GAAACCCATAAAAACATCTAGCTTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTA 23896 | || ||||| | ||||| | | ||| || | |||||| | | |||| Sbjct 247743 GGAAGGAGTAAAATTTCTTTGCTTCCGTTATTTGCACTTGGCGTAAAAATTTGCTCGCTA 247684 Query 23897 AATTTTCGTTAACAATACCATCACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAAT 23956 ||||||| ||||| |||||||| || ||||| ||||| | |||| ||| ||||||| Sbjct 247683 AATTTTCCAATACAATTCCATCACTGGCTGCAAAAAAAGCCAACACATGTTTAATAAAAT 247624 Query 23957 GTCTTTCATCAGTTGA--TAATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTC 24014 || |||||| || | |||||||| |||| || | ||| | || || |||| ||| Sbjct 247623 GTTTTTCAT--TTTCATTTAATTTTTCGAAATCTTTTAAATCGCTAGACAAGTCAATTTC 247566 Query 24015 ATCAACTGTCCAAAA 24029 ||| ||||||| || Sbjct 247565 CTCAGCTGTCCAGAA 247551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521486383387200