Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F000576715.1_202014-02-03] 25,756 sequences; 16,303,117 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq5544 109 6e-19 >seq5544 Length=836 Score = 109 bits (120), Expect = 6e-19 Identities = 269/403 (67%), Gaps = 10/403 (2%) Strand=Plus/Minus Query 16381 AATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTT 16440 ||||||||| | ||||| ||||| | ||||| | | || ||||||| || | Sbjct 822 AATCCATTTTGCTGCCCATAATGCTTTATTTTTTACAGCAGGGATATTTTCTATAGCATG 763 Query 16441 AAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACAT 16500 ||| || || | |||| | ||| | ||||| ||||||| | |||||| || | Sbjct 762 AAATAAATTTAATCTTTCTTTTTCATCTTTAATATAATTATCAATTAATAAACTATAGGT 703 Query 16501 TTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTAT 16560 |||||| || || || |||| ||||| ||||| ||| || | || || | ||| Sbjct 702 TTCTGAATGAATATTTTCTACAGCTATTTGAAAAGAATAAAATTTTTTTGCTTCTGTTAT 643 Query 16561 TTGTACTTCCACGTAAAATCGTTCC-GCCAGGTTCTCATTCACGATACCGTCACTTGCAG 16619 ||| || || | ||||| | | |||| ||||| || ||||| |||||||| | Sbjct 642 TTGAACCTCT-CTTAAAAATTTACTAGCCAAATTCTCTAATACTATACCATCACTTGCTG 584 Query 16620 CAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAG--AATATGCCA 16677 ||||||| || || | ||||| || |||| ||| || | ||| | ||| | || Sbjct 583 CAAAAAATGCTAACACATGCTTTATAAAATGTTTCTCAT----TGTCATTCAATTTCTCA 528 Query 16678 A--TCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCC 16735 | ||||||||||| | |||| ||| | |||||||| |||||||| ||| | || Sbjct 527 AAATCTTTTAAATCGCTAGATAAATCAATTTCTTCTGCTGTCCAAAATGAAGCTTCAGCT 468 Query 16736 TTTTTATACATTTTCCAAATATCATTGTATTGTATGGGAAATA 16778 || || || | | ||||| ||| ||| ||| ||| ||| Sbjct 467 TTCTTGTAAAAATCCCAAACTTCAGGATATAATATTGGATATA 425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511249750133920