Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F000576715.1_202014-02-03] 25,756 sequences; 16,303,117 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq11001 185 6e-42 >seq11001 Length=546 Score = 185 bits (204), Expect = 6e-42 Identities = 313/452 (69%), Gaps = 6/452 (1%) Strand=Plus/Minus Query 101633 AATCTAAGTGTTGGAAACGGTCTAGGAGTTCGCGTCAACTGCATTTTAAGAGCATCAATG 101692 ||| |||||||||| || || || ||| | | || ||||| | | ||| ||| Sbjct 454 AATTTAAGTGTTGGGAATGGATATGGTATTCTATTAAGTTGAATTTTTAAACTATCGATG 395 Query 101693 TGATCTACATAGATGTGAGCATCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATTA 101752 |||| ||| | || |||| ||||| | || ||||| || |||| | |||| Sbjct 394 TGATTATTATAAACATGCGCATTTCCTAAAACGTGTATAAATTCGGCAGGTTGCAAATTA 335 Query 101753 GTGACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCT 101812 ||| || |||||||| ||| |||| |||||| |||||| ||||| || |||||| Sbjct 334 CAGACTTGTGCAATCATATGAGTAAAAATAGAATAAGAAGCAATATTAAAAGGTACTCCT 275 Query 101813 AACCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATAA 101872 | || | |||| ||| |||||||||| ||| || | |||||||| | |||||| Sbjct 274 AGTCCTAAATCACATGACCTTTGATACATAATACATGATAATTTTCCATCGAAAACATAA 215 Query 101873 AATTGACTTAATACATGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCAA 101932 ||||||| ||| | ||||||||| || || |||||| || ||| |||||||| Sbjct 214 AATTGACATAAAATATGACAAGGAGGTAATGCCATTTGGTCAAGATCTTTTACATTCCAT 155 Query 101933 GCACACATTAACATCCTTCTATCTGTAGGGTTTGTTTTTATAGTATCAATCAACTGTTTT 101992 ||||||| | || |||||| |||||| | |||| || || || | | |||| Sbjct 154 GCACACAAAAGAATTCTTCTACTTGTAGGATCATTTTTAATTAAATTTATTATATTTTTT 95 Query 101993 AATTGGTCAACTCCT---TCTCCTTTATAATCGCGCCCAACACCTTTATATTCTGCTCCG 102049 ||||| ||||| ||| | | | | || ||| || | | | ||||||| |||||| Sbjct 94 AATTGATCAACACCTTTATTTTCATAATTATCATGC---ATATTTGTATATTCAGCTCCG 38 Query 102050 AAATGCCTCCACTGAAATCCATACACAGGTCC 102081 ||||| ||||| ||||| ||||| | |||||| Sbjct 37 AAATGTCTCCATTGAAAACCATAAATAGGTCC 6 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361137802796756