Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F000576715.1_202014-02-03] 25,756 sequences; 16,303,117 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq5544 172 7e-38 >seq5544 Length=836 Score = 172 bits (190), Expect = 7e-38 Identities = 282/401 (70%), Gaps = 4/401 (1%) Strand=Plus/Minus Query 24306 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATA 24365 |||| ||||| ||| ||||| || || ||||||||| ||| || | |||||| Sbjct 827 TCATTAATCCATTTTGCTGCCCATAATGCTTTATTTTTTACAGCAGGGATATTTTCTATA 768 Query 24366 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTA 24425 |||| ||| | || | |||| || |||||||| ||| ||||||| || | |||| Sbjct 767 GCATGAAATAAATTTAATCTTTCTTTTTCATCTTTAATATAATTATCAATTAATAAACTA 708 Query 24426 TACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCG 24485 || |||| |||||||| ||||| | || |||||||| || || | | || || Sbjct 707 TAGGTTTCTGAATGAATATTTTCTACAGCTATTTGAAAAGAATAAAATTTTTTTGCTTCT 648 Query 24486 GTAATCTGTACTTCTATACAAAATCGTTCT-GCTAAATTTTCATTCACTATTCCGTCACT 24544 || || || || ||| | ||||| | || || ||||| || ||||| || ||||| Sbjct 647 GTTATTTGAACCTCTCTTAAAAATT-TACTAGCCAAATTCTCTAATACTATACCATCACT 589 Query 24545 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTAT 24603 ||||||||||| || || ||||| |||||||||| ||| || | || || | ||| | Sbjct 588 TGCTGCAAAAAATGCTAACACATGCTTTATAAAATGTTTCTCAT-TGTCATTCAATTTCT 530 Query 24604 TCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTG 24663 |||| || | ||| |||||| ||| | |||||| ||||||||||||| || || | Sbjct 529 CAAAATCTTTTAAATCGCTAGATAAATCAATTTCTTCTGCTGTCCAAAATGAAGCTTCAG 470 Query 24664 CCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGA 24704 | || || || | || ||| | ||| ||||| |||||| Sbjct 469 CTTTCTTGTAAAAATCCCAAACTTCAGGATATAATATTGGA 429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593530451330880