Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F000576715.1_202014-02-03] 25,756 sequences; 16,303,117 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq11001 203 2e-47 >seq11001 Length=546 Score = 203 bits (224), Expect = 2e-47 Identities = 336/483 (70%), Gaps = 4/483 (1%) Strand=Plus/Minus Query 96965 TAAAATCATCAATAGATGCAATCTTTCTGGCA--AACTTTAGTGTTGGGAAAGGCCTGGG 97022 ||||||| |||||| | ||| | |||| || || ||||||||||| || || Sbjct 486 TAAAATCTTCAATATTTTTAATAT--CTGGATTTAATTTAAGTGTTGGGAATGGATATGG 429 Query 97023 AGTTCGCGTAAGCTGCTCTGTGAGAGCATCAATGTGATTCACATAAATGTGAGCATCTCC 97082 ||| |||| || | | | | ||| |||||||| ||||| || |||| ||| Sbjct 428 TATTCTATTAAGTTGAATTTTTAAACTATCGATGTGATTATTATAAACATGCGCATTTCC 369 Query 97083 TAAAGTGTGAATAAATTCTCCAGGAACTAAATCAGTGACATGGGCGATCATACAAGTTAA 97142 |||| ||| |||||||| |||| |||| | ||| || || |||||| ||| || Sbjct 368 TAAAACGTGTATAAATTCGGCAGGTTGCAAATTACAGACTTGTGCAATCATATGAGTAAA 309 Query 97143 TAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGTCCCATATCAGCTGATCTTTGATA 97202 | |||||| |||||| |||||||| || |||||||| | |||| ||| |||||||| Sbjct 308 AATAGAATAAGAAGCAATATTAAAAGGTACTCCTAGTCCTAAATCACATGACCTTTGATA 249 Query 97203 TAACTGACAGGAAAGCTTTCCATCACACACATAAAACTGACTCAATACATGACAGGGGGG 97262 | ||| || | |||||||| | |||||||| |||| || | |||||| || || Sbjct 248 CATAATACATGATAATTTTCCATCGAAAACATAAAATTGACATAAAATATGACAAGGAGG 189 Query 97263 CAACGCCATTTTTGGAACATCTAAGACATTCCAAGCACACATCAACATTCTTCTATCGGT 97322 || ||||||| || |||| |||||||| ||||||| | ||||||||| || Sbjct 188 TAATGCCATTTGGTCAAGATCTTTTACATTCCATGCACACAAAAGAATTCTTCTACTTGT 129 Query 97323 TGGGTTTGTGTGTATGGTATTAATTATCTGCTTTAATTGATCAACGCCTTCTCCACCATA 97382 || | | | || ||| ||||| | |||||||||||||| |||| |||| Sbjct 128 AGGATCATTTTTAATTAAATTTATTATATTTTTTAATTGATCAACACCTTTATTTTCATA 69 Query 97383 ATTGTGCTTAAGACCTTGATATTCTGCTCCAAAATGCCTCCATTGGAATCCATAAACAGG 97442 ||| | | | | | |||||| ||||| ||||| |||||||| || ||||||| ||| Sbjct 68 ATTATCATGCATATTTGTATATTCAGCTCCGAAATGTCTCCATTGAAAACCATAAATAGG 9 Query 97443 TCC 97445 ||| Sbjct 8 TCC 6 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346675144068920