Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F000576715.1_202014-02-03] 25,756 sequences; 16,303,117 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq11001 210 3e-49 seq5887 149 9e-31 seq6024 118 2e-21 >seq11001 Length=546 Score = 210 bits (232), Expect = 3e-49 Identities = 325/461 (70%), Gaps = 5/461 (1%) Strand=Plus/Minus Query 205321 TTTATTTTTAATTTTGGAAATGGGTTTGGTGTACGTTCTAATTGtttttttAATCCATTA 205380 |||| ||| | | |||| ||||| | |||| | | | | ||| ||||||| | || Sbjct 457 TTTAATTTAAGTGTTGGGAATGGATATGGTATTCTATTAAGTTGAATTTTTAAACTATCG 398 Query 205381 ATATGATTAACATATATATGTGCATTACCAATATTATGAATAAATTCATATGGTTTTAAA 205440 || |||||| ||| | ||| ||||| || | | || |||||||| |||| ||| Sbjct 397 ATGTGATTATTATAAACATGCGCATTTCCTAAAACGTGTATAAATTCGGCAGGTTGCAAA 338 Query 205441 TTAGTTAAATGTGCAATCATATAAGTCAATAAACTATAACTAGCAACATTAAATGGTACA 205500 ||| | ||||||||||||| ||| || | | |||| ||||| |||||| ||||| Sbjct 337 TTACAGACTTGTGCAATCATATGAGTAAAAATAGAATAAGAAGCAATATTAAAAGGTACT 278 Query 205501 CCTAAACCCATATCAGCTGATCTTTGATACATTTGACATGTAAGATATTTATTATTAATT 205560 |||| || | |||| ||| ||||||||||| ||||| | |||| || | Sbjct 277 CCTAGTCCTAAATCACATGACCTTTGATACATAATACATGATA---ATTTTCCATCGAAA 221 Query 205561 ACATGAAATTGTACAAAACA-ATGACAAGGTGGTATAACCATATTTTCAACATCTATAGG 205619 |||| |||||| ||| || | ||||||||| |||| |||| | |||| |||| | Sbjct 220 ACATAAAATTG-ACATAAAATATGACAAGGAGGTAATGCCATTTGGTCAAGATCTTTTAC 162 Query 205620 ATTCCAGGCTGTTAATATTATATTTCTAGATTCAGGtttattttttattttatttatAAT 205679 |||||| || || | || ||||| | ||| | |||||| ||| |||||| || Sbjct 161 ATTCCATGCACACAAAAGAATTCTTCTACTTGTAGGATCATTTTTAATTAAATTTATTAT 102 Query 205680 ATGTGTTAATTGATCAAATCCTTGATTTGTATAATTTGTATCCATATCAATATATTTAGC 205739 || | |||||||||||| |||| |||| |||||| || ||||| |||||| ||| Sbjct 101 ATTTTTTAATTGATCAACACCTTTATTTTCATAATTATCATGCATATTTGTATATTCAGC 42 Query 205740 ACCAAAATGACGCCATTGAAAACCATAAACTGGACCTAAAT 205780 || ||||| | ||||||||||||||||| || ||||||| Sbjct 41 TCCGAAATGTCTCCATTGAAAACCATAAATAGGTCCTAAAT 1 >seq5887 Length=807 Score = 149 bits (164), Expect = 9e-31 Identities = 292/428 (68%), Gaps = 8/428 (2%) Strand=Plus/Minus Query 205659 attttttattttatttatAATATGTGTTAATTGATCAAATCCTTGATTTGTATAATTTGT 205718 |||||| ||| |||||| |||| | |||||||||| | ||||| |||| |||||| Sbjct 803 ATTTTTAATTAAATTTATTATATTTTTTAATTGATCCACTCCTTTATTTTCATAATTATC 744 Query 205719 ATCCATATCAATATATTTAGCACCAAAATGACGCCATTGAAAACCATAAACTGGACCTAA 205778 || ||||| |||||| |||||| ||||| | ||||||||||||||||| || ||||| Sbjct 743 ATACATATTTGTATATTCAGCACCGAAATGTCTCCATTGAAAACCATAAATAGGTCCTAA 684 Query 205779 ATCACCTTCTTTTCTATCATTAAAACCACGtttttttatatattttaatgatccattttc 205838 ||| ||| ||||| | || | || | || | ||| | ||||| | Sbjct 683 ATCGTTAACTTCTCTATGAAATAATTTTCTATTATCTAAAAATTCCCTAGTACCATTAGC 624 Query 205839 atcccaaat--atggattcctttattttttaGAATATTTGTATTAGTTGATCCAGATATA 205896 ||||| || | |||| |||||| || |||| ||| ||| ||| ||| Sbjct 623 TTCCCATATCCTTACATTC--TTATTTAACAGCGTATTACCATTTGTTTCTCCTCTAATA 566 Query 205897 AACCATAATAATTCTTCAACAATTCCTCTCCAAAACATTGATTTTGTTGTAAATAATGGA 205956 ||||| | |||||||||| ||||||||| | || | | ||||| || |||||||| Sbjct 565 AACCAAAGCAATTCTTCAATAATTCCTCTTAAGAATAATTTCTTTGTAGTTAATAATGGG 506 Query 205957 AATGAATCATCTAATTTATATTTCATAGTTAAACCATATACAGTTTTTGTATCTACACCT 206016 || | | | ||| | | |||||||| | | || || | || | |||| ||| Sbjct 505 AAATATTGACTTAAATCAAATTTCATAATATATCCGAATTTACTTAAAACACCTACTCCT 446 Query 206017 GTTCTAT--TTTTGGTTATTCTTCCATTAGATAATATTTCTGATATACCTTTTAAATATT 206074 |||| || |||| |||| ||||||| || || || ||||| |||||||||| Sbjct 445 GTTCGATCACTTTGTTTAT--TTCCATTCATTATAATATCATATATAATATTTAAATATT 388 Query 206075 GATATTCA 206082 |||||||| Sbjct 387 GATATTCA 380 >seq6024 Length=798 Score = 118 bits (130), Expect = 2e-21 Identities = 310/473 (66%), Gaps = 10/473 (2%) Strand=Plus/Minus Query 202738 ATATTTTTTAATAAATAAATCAACATCAAATTTACGTCTACATCCTTCATAACTCATATA 202797 |||||||| || | | |||| |||||| | | |||| | | |||| ||||||| Sbjct 499 ATATTTTTGCATGTAATAGTCAATATCAAAATGTCTCTTACAACTATTATAATTCATATA 440 Query 202798 TCTAATTTTACCAAATATTGGTCTTTCTTTCCATGCTCTATCATGAATACCACAAATTGA 202857 ||||||||| || ||||| || ||| ||||| | |||||| || | |||||| Sbjct 439 TCTAATTTTTCCGAATATATTTCGTTCATTCCAACTTTGATCATGTATTGCCATAATTGA 380 Query 202858 CCACATACATCCAACATATCCATTTGGATCACGTCCATCTATAAAATATTTATCATTTAA 202917 |||| | ||||||||||| |||| | |||| ||| | | | ||||||||| Sbjct 379 GGACATGATTGAAACATATCCATGTGGACTTTTTGCATCAATAGCAAAATCATCATTTAA 320 Query 202918 ATNNNNNNNNNNNNNNAATGCT-TCTTCTGGTGATTT---TGTCCATTCTAATAtttttt 202973 | || ||| | ||| || || || ||| | | |||| || Sbjct 319 TTTCATGGCATATTTTAAAGCTGTTTTC----GAATTGCCTGACCAGTTCAGAATTTGTT 264 Query 202974 tAGCCCAATACATTCTTAAATATCCATGCATTTTACCATAGATAATCATTTGTTTTTGTG 203033 | |||||||||||| ||| || |||| ||| |||| | |||| | ||| ||| | Sbjct 263 TGCACCAATACATTCTCAAAAATTCATGAATTATACCTTCATTAATTAATTGCAATTGAG 204 Query 203034 ATGCATTCCATAAATTGTCATGAGTTAATGCA-TTTTCAAGTTGATATAAACTATATATA 203092 ||||||||||| ||||| || ||| |||| |||| |||| | ||||| | Sbjct 203 CACAATTCCATAAATCTTCATGTGTCTTAGCATTTTTGAAGTCTTCATAATC-ATATAAA 145 Query 203093 TGTTTTCTAGTATCATTTTTATGTTCATTTAGTGTTTTTATTGCCCAATTATTAGCACCA 203152 | || ||| |||| | |||| |||| | | | ||||||| | || | ||| Sbjct 144 TATTCTCTTTTATCTGCATCGTGTTTTTTTAAAGAATCTTTTGCCCAGTCTTTTCCTCCA 85 Query 203153 TTTATATTATCGTAATTTTCATTATAATAACAAAAATTATCACATAGTTCTTT 203205 || | ||| || ||||||| ||| |||||||| ||||| ||| ||| ||||| Sbjct 84 TTAAAATTGTCATAATTTTTATTGTAATAACAGAAATTGTCAGCTAGCTCTTT 32 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755212780940800