Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F000576715.1_202014-02-03] 25,756 sequences; 16,303,117 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq5544 163 3e-35 seq6281 114 1e-20 >seq5544 Length=836 Score = 163 bits (180), Expect = 3e-35 Identities = 260/365 (71%), Gaps = 6/365 (2%) Strand=Plus/Minus Query 16415 ATCCATTTTTTAGCCCAATTTGCTTTTTGTTTAACA-CAGTTCATGTTCTCTATTGCATT 16473 ||||||||| ||||| |||||| | ||| ||| ||| || || ||||| |||| Sbjct 821 ATCCATTTTGCTGCCCATAATGCTTTATTTTTTACAGCAGGG-ATATTTTCTATAGCATG 763 Query 16474 AAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACAT 16533 |||||||| | ||||||| |||| ||||||| |||| |||| ||||||||| | Sbjct 762 AAATAAATTTAATCTTTCTTTTTCATCTTTAATATAATTATCAATTAATAAACTATAGGT 703 Query 16534 TTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATAT 16593 ||||||||||||||| || | ||||| |||||| |||||| | | ||||| | ||| Sbjct 702 TTCTGAATGAATATTTTCTACAGCTATTTGAAAAGAATAAAATTTTTTTGCTTCTGTTAT 643 Query 16594 TTGTACTTCAGAGTAAAACCTTTCT-GCTAAGTTTTCGTTAACTATTCCATCGCTAGCTG 16652 ||| || || ||||| || || || || || || ||||| ||||| || |||| Sbjct 642 TTGAACCTC-TCTTAAAAATTTACTAGCCAAATTCTCTAATACTATACCATCACTTGCTG 584 Query 16653 CAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATC-TGAAAGTTTTAACCAG 16711 ||||||| || | | || || ||||||| ||| || || || | || || | | | Sbjct 583 CAAAAAATGCTAACACATGCTTTATAAAATGTTTCTCATTGTCATTCAATTTCTCA-AAA 525 Query 16712 TCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTT 16771 || ||||| | |||||||| | |||||| | |||||||| ||||| |||| || Sbjct 524 TCTTTTAAATCGCTAGATAAATCAATTTCTTCTGCTGTCCAAAATGAAGCTTCAGCTTTC 465 Query 16772 TTATA 16776 || || Sbjct 464 TTGTA 460 >seq6281 Length=778 Score = 114 bits (126), Expect = 1e-20 Identities = 290/432 (67%), Gaps = 18/432 (4%) Strand=Plus/Minus Query 15943 TTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATT 16002 ||||||||| || || || || || || || ||||||||||||| | |||||| Sbjct 494 TTTTTGATAATCTGCGACCCTTTTCTCGAAAAAGTTTGTTTTTCCTTGAAGTGAAATTAA 435 Query 16003 TTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCCCA---ATTCCAA 16059 ||||| ||| || |||||||||||| | |||| |||||| | |||| Sbjct 434 GTCCATCCAATTGAATGGATTTTTTGAATGGAAAATTTTAGAGCATCCTAAACATTC--- 378 Query 16060 CAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATC-ACAGTTCATTCCTA 16118 ||||||||||| || |||||||||||||| || || ||| || | | ||||| |||| Sbjct 377 TAATAATCTATCTGCAACAAATTCTATATATTGAGACA-TAAGTCTAGAATTCATACCTA 319 Query 16119 TTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGA 16178 |||| | | || | || ||| || |||| | |||| | | || ||||| | | Sbjct 318 TTAAATCACATGGTAATGATTCACATATAAAAGATCTTTCAACTTCTACAGCTTCTTTAA 259 Query 16179 TTATATCTCTTACTACACTATTTAACGGAGGGTTTAATAAGTGTT----TAAACATTATA 16234 |||| | ||| || | || | | ||||| || | | || | |||| Sbjct 258 CAATATTTTGTAC--CATTTGTT--CTGGAAGTTTATTATCTAATAAACTATAAATTAAG 203 Query 16235 CAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGA 16294 ||| |||||| ||| | |||||| || ||||||||||| || || |||||| | | Sbjct 202 CAATTAAAATCTGTATGTAGTCCTTCATCTCTACTTATTAATTCATTACTAAATGTTAAA 143 Query 16295 CC-TGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAA 16353 || || ||| | | ||||||||| |||||| ||||| ||| |||| || || Sbjct 142 CCATGTAATTTAT-TTTGTTTTTTAAACCAAAAAATAGCACAAAAGCTACCACTGAATAA 84 Query 16354 TATACCTTCAAC 16365 ||| |||||||| Sbjct 83 TATTCCTTCAAC 72 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462363094261600