Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F000576715.1_202014-02-03] 25,756 sequences; 16,303,117 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq11001 201 9e-47 seq5887 105 5e-18 >seq11001 Length=546 Score = 201 bits (222), Expect = 9e-47 Identities = 376/547 (69%), Gaps = 4/547 (1%) Strand=Plus/Plus Query 20222 ATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGTTGACATGA 20281 |||| || ||| | ||||| ||||||||||||||||| |||||||||||| | ||| Sbjct 1 ATTTAGGACCTATTTATGGTTTTCAATGGAGACATTTCGGAGCTGAATATACAAATATGC 60 Query 20282 ACACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATTTAATT-AAA 20340 | |||||| |||| || ||||||||| ||||| | || ||||||||| ||| Sbjct 61 ATGATAATTATGAAAATAAAGGTGTTGATCAATTAAAAAATATAATAAATTTAATTAAAA 120 Query 20341 ACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATGTGCCTTTA 20400 | || || | | | ||||||||| |||| || || ||||| | |||||| | | Sbjct 121 ATGATCCTACAAG-TAGAAGAATTCTTTTGTGTGCATGGAATGTAAAAGATCTTGACCAA 179 Query 20401 ATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAATAATGAATTGTCG 20460 ||||| || ||||| |||||||| |||| |||||||| ||| || |||| || Sbjct 180 ATGGCATTACCTCCTTGTCATATTTTATGTCAATTTTATGTTTTCGATGGAAAATTATCA 239 Query 20461 TGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGCAAGT 20520 ||| ||||||||| | || |||| | ||||| || || ||||| |||||||| | Sbjct 240 TGTATTATGTATCAAAGGTCATGTGATTTAGGACTAGGAGTACCTTTTAATATTGCTTCT 299 Query 20521 TATGCGCTGCTTACGTATATGATTGCACATGTTACAGATTTAAAAACGGGTGACTTAGTC 20580 ||| | | |||| ||||||||||||| || |||| || | | || || | Sbjct 300 TATTCTATTTTTACTCATATGATTGCACAAGTCTGTAATTTGCAACCTGCCGAATTTATA 359 Query 20581 CACACCATAGGAGACGCGCATATTTACCTTAATCATATAGA-ACCTTTAAAATTACAGTT 20639 ||| ||||| | |||||| |||| |||||| || || | || |||||| | || Sbjct 360 CACGTTTTAGGAAATGCGCATGTTTATAATAATCACATCGATAGTTTAAAAATTCAACTT 419 Query 20640 AACACGACAACCAAAACAATTCCCAACTCTTCGCATTACTCGAACTGTTAAAGATATTAA 20699 || | || |||| | | ||||||||| ||| | | || | | ||||| ||||| | Sbjct 420 AATA-GAATACCATATCCATTCCCAACACTTAAATTAAATCCAGATATTAAAAATATTGA 478 Query 20700 CGATTTTAAAGCTGATGATTTTGTGTTAGAAGGTTATAATCCCCATAATTCAATTCCAAT 20759 ||||||| | | |||||| || || |||| || ||| | |||| |||| Sbjct 479 AGATTTTACAATTTCGGATTTTACAATACAAAATTATGTTCATCATGAAAAAATTTCAAT 538 Query 20760 GGAAATG 20766 ||| ||| Sbjct 539 GGATATG 545 >seq5887 Length=807 Score = 105 bits (116), Expect = 5e-18 Identities = 209/304 (69%), Gaps = 9/304 (3%) Strand=Plus/Plus Query 20043 ATTTCCC-TTATTAACTACGAAACGGGTATTTTGGAAAGGCGTTGTTGAAGAGTTATTAT 20101 ||||||| ||||||||||| || |||| | | ||| || ||||||| || | | Sbjct 502 ATTTCCCATTATTAACTACAAAGAAATTATTCTTAAGAGGAATTATTGAAGAATTGCTTT 561 Query 20102 GGTTTATTAAAGGATCAACAAATTCTACCGAGCTTGTAGAAAAAGGAGTTAAG-ATTTGG 20160 ||||||||| |||| ||||||| || ||| || || ||| | |||| || ||| Sbjct 562 GGTTTATTAGAGGAGAAACAAATGGTAATACGCTGTTA-AATAAGAATGTAAGGATATGG 620 Query 20161 AGCGCACATGGATCTAAGCAATTTTTACACA---GCAATGGATTTGACAACCGTCAAGAG 20217 || |||| ||| | |||||||| | | | || |||| | | | ||| Sbjct 621 GAAGCTAATGGTACTAGGGAATTTTTAGATAATAGAAAATTATTTCATA---GAGAAGTT 677 Query 20218 GGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGTTGAC 20277 ||||| || ||| | ||||| ||||||||||||||||| || ||||||||| | Sbjct 678 AACGATTTAGGACCTATTTATGGTTTTCAATGGAGACATTTCGGTGCTGAATATACAAAT 737 Query 20278 ATGAACACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATTTAATT 20337 ||| | |||||| ||||||| ||||||||| ||||| | || ||||||||| Sbjct 738 ATGTATGATAATTATGAAAATAAAGGAGTGGATCAATTAAAAAATATAATAAATTTAATT 797 Query 20338 AAAA 20341 |||| Sbjct 798 AAAA 801 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399058695643420