Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F000576715.1_202014-02-03] 25,756 sequences; 16,303,117 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq5544 152 5e-32 seq6281 102 8e-17 >seq5544 Length=836 Score = 152 bits (168), Expect = 5e-32 Identities = 272/395 (69%), Gaps = 4/395 (1%) Strand=Plus/Minus Query 14384 ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTA 14443 ||||||||| |||||| | ||| ||||| | | | || |||| ||||||| | Sbjct 821 ATCCATTTTGCTGCCCATAATGCTTTATTTTTTACAGCAGGGATATTTTCTATAGCATGA 762 Query 14444 AATAAATGT--TCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACA 14501 ||||||| | || |||| ||| | || ||| || ||||||| | ||| ||||| Sbjct 761 AATAAATTTAATCTTTCTTTTTCATCTTT--AATATAATTATCAATTAATAAACTATAGG 704 Query 14502 TTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACC 14561 |||| || || || ||||| | |||||| |||||| |||||| | | ||||||| Sbjct 703 TTTCTGAATGAATATTTTCTACAGCTATTTGAAAAGAATAAAATTTTTTTGCTTCTGTTA 644 Query 14562 ATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTG 14621 ||| |||||| ||||| | |||||||| || |||||||||||||| |||| Sbjct 643 TTTGAACCTCTCTTAAAAATTTACTAGCCAAATTCTCTAATACTATACCATCACTTGCTG 584 Query 14622 CAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTTTTTCCAAT 14681 |||||||||| || | | || ||||| | || ||| | | | | ||| | ||| Sbjct 583 CAAAAAATGCTAACACATGCTTTATAAAATGTTTCTCATTGTCATTCAATTTCTCAAAAT 524 Query 14682 CGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTTTTT 14741 | |||||| |||| | ||| | ||| || |||||||||| ||| ||||||| | Sbjct 523 CTTTTAAATCGCTAGATAAATCAATTTCTTCTGCTGTCCAAAATGAAGCTTCAGCTTTCT 464 Query 14742 TATACATTACCCATATTTCTTTATATAATATAGGA 14776 | || | |||| | ||| ||||||||| ||| Sbjct 463 TGTAAAAATCCCAAACTTCAGGATATAATATTGGA 429 >seq6281 Length=778 Score = 102 bits (112), Expect = 8e-17 Identities = 291/432 (67%), Gaps = 18/432 (4%) Strand=Plus/Minus Query 13912 TTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATT 13971 ||||||||| || || ||||| || || ||||| ||||| |||| ||||| || Sbjct 494 TTTTTGATAATCTGCGACCCTTTTCTCGAAAAAGTTTGTTTTTCCTTGAAGTGAAATTAA 435 Query 13972 TTCCATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTAG---TTCTAA 14028 ||||| ||| ||||||||| |||| || | |||| || |||| |||||| Sbjct 434 GTCCATCCAATTGAATGGATTTTTTGAATGGAAAATTTTAGAGCATCCTAAACATTCTAA 375 Query 14029 TAGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATC-ACAATTCATACCTA 14087 || ||||||| |||| || || |||||||||||||| || || | |||||||||||| Sbjct 374 TA---ATCTATCTGCAACAAATTCTATATATTGAGACAT-AAGTCTAGAATTCATACCTA 319 Query 14088 TTAGTTTTACA--GGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTT 14145 ||| | ||| | ||| || | || ||| | |||| | ||||| || || Sbjct 318 TTA-AATCACATGGTAATGAT-TCACATATAAAAGATCTTTCAACTTCTACAGCTTCTTT 261 Query 14146 TATAATA-ATCGTAATAATTTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAAC 14204 | |||| | ||| | || | |||| ||| | | | || ||||||| | Sbjct 260 AACAATATTTTGTACCATTTGTTCTGGAAGTTTATTATCTAATA-AACTATAAATTAAGC 202 Query 14205 ACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATC 14264 | |||||| ||| || || ||||||||||| || | ||| || ||||||||| | Sbjct 201 AATTAAAATCTGTATGTAGTCCTTCATCTCTACTTATTAATTCATTACTAAATGTTAAAC 142 Query 14265 C-TGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGAT-CCGGAAAAGAA 14322 | || || || | ||||||| |||||||| || ||| | || | | || || || Sbjct 141 CATGTAATTTAT-TTTGTTTTTTAAACCAAAAAATAGCA-CAAAAGCTACCACTGAATAA 84 Query 14323 TATTCCCTCAAC 14334 |||||| ||||| Sbjct 83 TATTCCTTCAAC 72 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482190308834080