Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F000576715.1_202014-02-03] 25,756 sequences; 16,303,117 total letters Query= NC_003038.1 Length=212482 Score E Sequences producing significant alignments: (Bits) Value seq9540 93.3 6e-14 seq11001 87.8 2e-12 seq6080 84.2 3e-11 >seq9540 Length=598 Score = 93.3 bits (102), Expect = 6e-14 Identities = 158/225 (70%), Gaps = 8/225 (4%) Strand=Plus/Plus Query 188865 ATCGCTTTGATCAAACATTTTTTCATGAAGAAATTTGGATATTCCATGTACAAGCATACA 188924 ||| |||| ||||| | | |||| | | | ||||| ||||||| | |||||| Sbjct 252 ATCACTTTCTTCAAATAATCTTTCTTTTAACATTTTGGCAGATCCATGTGATATCATACA 311 Query 188925 ATCTTTTTCCATTTCTCCGATTCTTAAACCTCCTTCATTTGCTCTCCCGTTTAGTGGTTG 188984 |||| ||||||||||||| | ||||| ||| || || ||| ||| || | | |||||| Sbjct 312 ATCTCTTTCCATTTCTCCAAATCTTAGACCACCATCTCTTGATCTTCCTTCTGTTGGTTG 371 Query 188985 CCTAGTAATTGCATGTCGTTTTTGGT-TTGTACTTGCTCTTGAAAATATTTTATCTGATA 189043 || ||||| || | ||| |||| | |||| ||||| | |||||||||| | Sbjct 372 TCTTGTAAT--CA--TAGTTAATGGTCCTCTACT---TCTTGCATGTATTTTATCTTCAA 424 Query 189044 CCATGTGCGTCAATCTGTGGTAATATACTGGTCCAAAGAAGATTT 189088 |||| || | ||||| || ||||| |||||||| || |||| Sbjct 425 CCATATGTTTTAATCTTTGATAATAAGTTGGTCCAATAAATATTT 469 >seq11001 Length=546 Score = 87.8 bits (96), Expect = 2e-12 Identities = 231/348 (66%), Gaps = 21/348 (6%) Strand=Plus/Plus Query 104405 ATTTAGGACCTATTTATGGTTTTCAGTGGAGACATTATGG---TGAAAAT-TATAT-TGG 104459 ||||||||||||||||||||||||| |||||||||| || |||| || | || || Sbjct 1 ATTTAGGACCTATTTATGGTTTTCAATGGAGACATTTCGGAGCTGAATATACAAATATGC 60 Query 104460 GTG-CGATAATAAATATGGTGGTATAGATCAACTCAAAAATATTATTACAACAATTCAAA 104518 || || || || || ||| | |||||| | |||||||| || | |||| ||| Sbjct 61 ATGATAATTATGAAAATAAAGGTGTTGATCAATTAAAAAATATAATAAATTTAATTAAAA 120 Query 104519 ATGAACCTTGGGATAGAAGAATGATATTATTAGCTTGGAACCCAAAGGATAATTCTAAAA 104578 |||| ||| ||||||||| | || | || ||||| ||| ||| | ||| Sbjct 121 ATGATCCTACAAGTAGAAGAATTCTTTTGTGTGCATGGAATGTAAAAGATCTTGACCAAA 180 Query 104579 TGGCACTTCCTCCTTGTCATTGTATAGCACATTTTGATGTAAGTTCAAAAATAAATGGTA 104638 ||||| | |||||||||||| | || || ||| |||| || | ||| Sbjct 181 TGGCATTACCTCCTTGTCATATTTTATGTCAATTTTATGT---TT------TCGATG--- 228 Query 104639 AAAGAGAATTGTCTTGTCATTTATTTCAAAGATCTGCAGATATGGGGTTGGGAGTTCCTT 104698 || |||| || ||| | | | |||||| || ||| | || | ||||| |||| Sbjct 229 ---GAAAATTATCATGTATTATGTATCAAAGGTCATGTGATTTAGGACTAGGAGTACCTT 285 Query 104699 TTAACATAGCAAGTTATGCATTATTAACACATATAATAGCTCATGTCT 104746 |||| || || |||| | | || || ||||| || || || |||| Sbjct 286 TTAATATTGCTTCTTATTCTATTTTTACTCATATGATTGCACAAGTCT 333 >seq6080 Length=793 Score = 84.2 bits (92), Expect = 3e-11 Identities = 115/157 (73%), Gaps = 8/157 (5%) Strand=Plus/Minus Query 188922 ACAATCTTTTTCCATTTCTCCGATTCTTAAACCTCCTTCATTTGCTCTCCCGTTTAG-TG 188980 ||||||| |||||||||| || | ||||||||||||||| |||| ||| || || || || Sbjct 381 ACAATCTCTTTCCATTTCACCTAATCTTAAACCTCCTTCTTTTGATCTACC-TTCAGTTG 323 Query 188981 GTTGCCTAGTAATTGCATGTCGTTTTTGGTTTGTACTTGCTCTTGAAAATATTTTATCTG 189040 |||| || || | | |||| |||| | || ||||| | | ||||||||| Sbjct 322 GTTGTCTTGTGAGTAATTGTC----TTGG--TCCTCTAGCTCTAGCATGGATTTTATCTT 269 Query 189041 ATACCATGTGCGTCAATCTGTGGTAATATACTGGTCC 189077 |||||| || | ||| | || ||||||| |||||| Sbjct 268 GTACCATATGTTTTAATTTTTGATAATATATTGGTCC 232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 679595533753920