Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F000576715.1_202014-02-03] 25,756 sequences; 16,303,117 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq5544 170 2e-37 >seq5544 Length=836 Score = 170 bits (188), Expect = 2e-37 Identities = 281/400 (70%), Gaps = 4/400 (1%) Strand=Plus/Minus Query 33753 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG 33812 |||| ||||| ||| ||||| || || ||||||||| ||| || ||||||| Sbjct 827 TCATTAATCCATTTTGCTGCCCATAATGCTTTATTTTTTACAGCAGGGATATTTTCTATA 768 Query 33813 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTA 33872 |||| ||| | || | |||| || |||||||| |||| |||| || || | |||| Sbjct 767 GCATGAAATAAATTTAATCTTTCTTTTTCATCTTTAATATAATTATCAATTAATAAACTA 708 Query 33873 TACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCG 33932 || |||| |||||||| ||||| | || || ||||| || || | | || || Sbjct 707 TAGGTTTCTGAATGAATATTTTCTACAGCTATTTGAAAAGAATAAAATTTTTTTGCTTCT 648 Query 33933 GTAATCTGCACTTCTGTACAAAATCGTTCT-GCTAAATTTTCATTCACTATTCCATCACT 33991 || || || || ||| | ||||| | || || ||||| || ||||| |||||||| Sbjct 647 GTTATTTGAACCTCTCTTAAAAATT-TACTAGCCAAATTCTCTAATACTATACCATCACT 589 Query 33992 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTAT 34050 ||||||||||| || || ||||| |||||||||| ||| || | || || | ||| | Sbjct 588 TGCTGCAAAAAATGCTAACACATGCTTTATAAAATGTTTCTCAT-TGTCATTCAATTTCT 530 Query 34051 TCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTG 34110 |||| || | ||| |||||| ||| | |||||| ||||||||||||| || || | Sbjct 529 CAAAATCTTTTAAATCGCTAGATAAATCAATTTCTTCTGCTGTCCAAAATGAAGCTTCAG 470 Query 34111 CCTTTTTATACATATTCCAGATGTCATGATATTGGATTGG 34150 | || || || | || ||| | ||| ||||| ||||| Sbjct 469 CTTTCTTGTAAAAATCCCAAACTTCAGGATATAATATTGG 430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629614830223680