Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F000576715.1_202014-02-03] 25,756 sequences; 16,303,117 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq5544 190 2e-43 seq6281 114 1e-20 seq6080 95.1 1e-14 >seq5544 Length=836 Score = 190 bits (210), Expect = 2e-43 Identities = 251/343 (73%), Gaps = 4/343 (1%) Strand=Plus/Minus Query 11807 ATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTAC-GCATTCCATTGTTTCTATAGCGTT 11865 ||||||||| ||||| ||||| |||||||| ||| || |||||||||| | Sbjct 821 ATCCATTTTGCTGCCCATAATGCTTTATTTTTTACAGCAGGG-ATATTTTCTATAGCATG 763 Query 11866 AAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACAT 11925 |||||||| | | ||||| | | |||| | | ||| |||| |||||||||||||| | Sbjct 762 AAATAAATTTAATCTTTCTTTTTCATCTTTAATATAATTATCAATTAATAAACTATAGGT 703 Query 11926 TTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACA 11985 |||||||||||||||||| | |||||||||||| ||| || | ||| |||| Sbjct 702 TTCTGAATGAATATTTTCTACAGCTATTTGAAAAGAATAAAATTTTTTTGCTTCTGTTAT 643 Query 11986 CTGTACATCCACATAAAATCTTTC-CGCTAAATTCTCATTTACAATACCATCACTAGATG 12044 || || | | | ||||| || | || |||||||| ||| ||||||||||| | || Sbjct 642 TTGAACCT-CTCTTAAAAATTTACTAGCCAAATTCTCTAATACTATACCATCACTTGCTG 584 Query 12045 CAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCCCAAT 12104 |||||||||||| | ||| |||||||| | ||| || | | | | ||||| || ||| Sbjct 583 CAAAAAATGCTAACACATGCTTTATAAAATGTTTCTCATTGTCATTCAATTTCTCAAAAT 524 Query 12105 CATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAA 12147 | | |||||| | |||||||| | |||||| | |||||||| Sbjct 523 CTTTTAAATCGCTAGATAAATCAATTTCTTCTGCTGTCCAAAA 481 >seq6281 Length=778 Score = 114 bits (126), Expect = 1e-20 Identities = 290/430 (67%), Gaps = 16/430 (4%) Strand=Plus/Minus Query 11363 TCGAAAAAATTAGTCTTACCTTCTAGTGATATATACTCCATAAAGCTAAAAGGATTATAT 11422 |||||||| || || || |||| ||||| || | ||||| | | || ||||| | | Sbjct 469 TCGAAAAAGTTTGTTTTTCCTTGAAGTGAAATTAAGTCCATCCAATTGAATGGATTTTTT 410 Query 11423 ACATTGAAGACTTTTTCACAACCTAACTCTGTTAATAATCTATCTGCGACGAATTCTATA 11482 || ||| | ||| || ||||| | ||||||||||||||| || ||||||||| Sbjct 409 GAATGGAAAATTTTAGAGCATCCTAAACATTCTAATAATCTATCTGCAACAAATTCTATA 350 Query 11483 TACTGAGACATTAAACAACAATTCATACCTATAAGATC-CACCGGAAT-AGCAACTGTCA 11540 || |||||||| | | | ||||||||||||| | ||| || | ||| | || | Sbjct 349 TATTGAGACATAAGTCTAGAATTCATACCTATTAAATCACATGGTAATGATTCACATATA 290 Query 11541 AAAACTCCTTTTCTATATTAACCGCATCAATGATTATCGACGTTATAAC-TTCCT--TAG 11597 ||| || |||| | | || || || | | || | || || | || | | | Sbjct 289 AAAGATC--TTTCAACTTCTACAGCTTCTTTAACAAT--ATTTTGTACCATTTGTTCTGG 234 Query 11598 ATGGT--GGATGTAATAAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTC 11655 | | | || ||||||| || | ||||| || |||||| ||||| ||||| Sbjct 233 AAGTTTATTATCTAATAAA---CTATAAATTAAGCAATTAAAATCTGTATGTAGTCCTTC 177 Query 11656 GTCTCTACTTATTAGTTCATTAGAAAATGTTAATCC-GGGCATCAATCCTCGtttttttA 11714 ||||||||||||| ||||||| ||||||||| || | || || | ||||||| | Sbjct 176 ATCTCTACTTATTAATTCATTACTAAATGTTAAACCATGTAATTTAT-TTTGTTTTTTAA 118 Query 11715 TCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTA 11774 |||||| |||||| ||| |||| || |||||||| || ||| |||| |||| Sbjct 117 ACCAAAAAATAGCACAAAAGCTACCACTGAATAATATTCCTTCAACACATGCATTAGCTA 58 Query 11775 CTACTCTTTC 11784 ||| ||||| Sbjct 57 CTATCCTTTC 48 >seq6080 Length=793 Score = 95.1 bits (104), Expect = 1e-14 Identities = 135/185 (73%), Gaps = 4/185 (2%) Strand=Plus/Plus Query 108139 AAACAAAAGTATTTATGGGGCCTATATATTATCTTAGACTTAGACATCTAACACAGGATA 108198 ||||| | |||||||||| || |||||||||| | | | | |||| | ||| |||| Sbjct 215 AAACATATATATTTATGGGACCAATATATTATCAAAAATTAAAACATATGGTACAAGATA 274 Query 108199 AGGCTACCGTTAGATGTAGAGGGaaaaaaaCAAA-ACTTATTCGTCAAGCTAATGAAGGT 108257 | | |||| |||||| | || |||| ||| | | ||| | | ||||||| Sbjct 275 AAATCCATGCTAGAGCTAGAGG-ACCAAGACAATTACTCACAAGACAACCAACTGAAGGT 333 Query 108258 AGACGAAAAGGAGGTGGTATTAAGTTT-GGTGAAATGGAAAGAGATTGTCTAATAGCTCA 108316 ||| ||||| ||| ||| ||||| || ||||||||||||||||||||| ||||||| | Sbjct 334 AGATCAAAAGAAGGAGGT-TTAAGATTAGGTGAAATGGAAAGAGATTGTTTAATAGCATA 392 Query 108317 TGGTG 108321 ||||| Sbjct 393 TGGTG 397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468373958440640