Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F000576715.1_202014-02-03] 25,756 sequences; 16,303,117 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq5544 174 2e-38 >seq5544 Length=836 Score = 174 bits (192), Expect = 2e-38 Identities = 280/400 (70%), Gaps = 2/400 (1%) Strand=Plus/Minus Query 36329 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATA 36388 |||| ||||| ||| ||||| || || ||||||||| ||| || | |||||| Sbjct 827 TCATTAATCCATTTTGCTGCCCATAATGCTTTATTTTTTACAGCAGGGATATTTTCTATA 768 Query 36389 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTA 36448 |||| ||| | || | |||| || |||||||| ||| ||||||| || | |||| Sbjct 767 GCATGAAATAAATTTAATCTTTCTTTTTCATCTTTAATATAATTATCAATTAATAAACTA 708 Query 36449 TACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCG 36508 || |||| |||||||| ||||| | || |||||||| || || | | || || Sbjct 707 TAGGTTTCTGAATGAATATTTTCTACAGCTATTTGAAAAGAATAAAATTTTTTTGCTTCT 648 Query 36509 GTAATCTGTACTTCTGTACAAAATCGTTCT-GCTAAATTTTCATTCACTATTCCGTCACT 36567 || || || || ||| | ||||| | || || ||||| || ||||| || ||||| Sbjct 647 GTTATTTGAACCTCTCTTAAAAATT-TACTAGCCAAATTCTCTAATACTATACCATCACT 589 Query 36568 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATT 36627 ||||||||||| || || ||||| |||||||||| ||| || || | | ||| | Sbjct 588 TGCTGCAAAAAATGCTAACACATGCTTTATAAAATGTTTCTCATTGTCATTCAATTTCTC 529 Query 36628 CCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGC 36687 |||| || | ||| |||||| ||| | |||||| ||||||||||||| || || || Sbjct 528 AAAATCTTTTAAATCGCTAGATAAATCAATTTCTTCTGCTGTCCAAAATGAAGCTTCAGC 469 Query 36688 CTTTTTATACATATTCCAGATGTCATGATATTGAATTGGA 36727 || || || | || ||| | ||| ||||| |||||| Sbjct 468 TTTCTTGTAAAAATCCCAAACTTCAGGATATAATATTGGA 429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657960901267040