Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F000576715.1_202014-02-03] 25,756 sequences; 16,303,117 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq5544 178 2e-39 >seq5544 Length=836 Score = 178 bits (196), Expect = 2e-39 Identities = 278/398 (70%), Gaps = 0/398 (0%) Strand=Plus/Minus Query 50131 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG 50190 |||| ||||| ||| ||||| || || ||||||||| ||| || ||||||| Sbjct 827 TCATTAATCCATTTTGCTGCCCATAATGCTTTATTTTTTACAGCAGGGATATTTTCTATA 768 Query 50191 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTA 50250 |||| ||| | || | |||| || |||||||| |||| |||| || || | |||| Sbjct 767 GCATGAAATAAATTTAATCTTTCTTTTTCATCTTTAATATAATTATCAATTAATAAACTA 708 Query 50251 TACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCG 50310 || |||| |||||||| ||||| | || || ||||| || || | | || || Sbjct 707 TAGGTTTCTGAATGAATATTTTCTACAGCTATTTGAAAAGAATAAAATTTTTTTGCTTCT 648 Query 50311 GTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTG 50370 || || || || ||| | ||||| ||| ||||| || ||||| || ||||| Sbjct 647 GTTATTTGAACCTCTCTTAAAAATTTACTAGCCAAATTCTCTAATACTATACCATCACTT 588 Query 50371 GCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTC 50430 ||||||||||| || || ||||| |||||||||||||| || ||| | | ||| | Sbjct 587 GCTGCAAAAAATGCTAACACATGCTTTATAAAATGTTTCTCATTGTCATTCAATTTCTCA 528 Query 50431 CAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 50490 |||| || | ||| |||||| ||| | |||||| ||||||||||||| || || || Sbjct 527 AAATCTTTTAAATCGCTAGATAAATCAATTTCTTCTGCTGTCCAAAATGAAGCTTCAGCT 468 Query 50491 TTTTTATACATATTCCAGATGTCATGATATTGGATTGG 50528 || || || | || ||| | ||| ||||| ||||| Sbjct 467 TTCTTGTAAAAATCCCAAACTTCAGGATATAATATTGG 430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718037553359840