Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F000576715.1_202014-02-03] 25,756 sequences; 16,303,117 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq5544 143 3e-29 seq6281 113 4e-20 >seq5544 Length=836 Score = 143 bits (158), Expect = 3e-29 Identities = 270/395 (68%), Gaps = 4/395 (1%) Strand=Plus/Minus Query 14052 ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTA 14111 ||||||||| |||||| | ||| ||||| | | | || |||| ||||||| | Sbjct 821 ATCCATTTTGCTGCCCATAATGCTTTATTTTTTACAGCAGGGATATTTTCTATAGCATGA 762 Query 14112 AATAAATAT--TCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACA 14169 ||||||| | || |||| ||| | || ||| || ||||||| | ||| ||||| Sbjct 761 AATAAATTTAATCTTTCTTTTTCATCTTT--AATATAATTATCAATTAATAAACTATAGG 704 Query 14170 TTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACC 14229 |||| || || || ||||| | |||||| |||||| |||||| | | ||||| | Sbjct 703 TTTCTGAATGAATATTTTCTACAGCTATTTGAAAAGAATAAAATTTTTTTGCTTCTGTTA 644 Query 14230 ATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTG 14289 ||| || || ||||| | |||||||| || |||||||||||||| |||| Sbjct 643 TTTGAACCTCTCTTAAAAATTTACTAGCCAAATTCTCTAATACTATACCATCACTTGCTG 584 Query 14290 CAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAAT 14349 |||||||||| || | | || ||||| | || ||| | | || | ||| | ||| Sbjct 583 CAAAAAATGCTAACACATGCTTTATAAAATGTTTCTCATTGTCATTCAATTTCTCAAAAT 524 Query 14350 CGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTT 14409 | |||||| |||| | ||| | ||| || |||||||||| ||| ||||||| | Sbjct 523 CTTTTAAATCGCTAGATAAATCAATTTCTTCTGCTGTCCAAAATGAAGCTTCAGCTTTCT 464 Query 14410 TATACATTACCCATATTTCTTTATATAATATAGGA 14444 | || | |||| | ||| ||||||||| ||| Sbjct 463 TGTAAAAATCCCAAACTTCAGGATATAATATTGGA 429 >seq6281 Length=778 Score = 113 bits (124), Expect = 4e-20 Identities = 296/434 (68%), Gaps = 22/434 (5%) Strand=Plus/Minus Query 13580 TTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATT 13639 ||||||||| || || ||||| || || ||||| ||||| |||| ||||| || Sbjct 494 TTTTTGATAATCTGCGACCCTTTTCTCGAAAAAGTTTGTTTTTCCTTGAAGTGAAATTAA 435 Query 13640 TTCCATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAG---TTCTAA 13696 ||||| ||| ||||||||| |||| || | |||| || |||| |||||| Sbjct 434 GTCCATCCAATTGAATGGATTTTTTGAATGGAAAATTTTAGAGCATCCTAAACATTCTAA 375 Query 13697 TAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATC-ACAATTCATACCTA 13755 || ||||||| |||| ||| || |||||||||||||| || || | |||||||||||| Sbjct 374 TA---ATCTATCTGCAACAAATTCTATATATTGAGACAT-AAGTCTAGAATTCATACCTA 319 Query 13756 TTAGTTTTACA--GGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTT 13813 ||| | ||| | ||| || | || ||| | |||| | ||||| ||||| Sbjct 318 TTA-AATCACATGGTAATGAT-TCACATATAAAAGATCTTTCAACTTCTACAGCTTCTTT 261 Query 13814 TATAATA-ATTGTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAAC 13872 | |||| ||||| | | | |||| ||| | | | || ||||||| | Sbjct 260 AACAATATTTTGTACCATTTGTTCTGGAAGTTTATTATCTAATA-AACTATAAATTAAGC 202 Query 13873 ACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATC 13932 | |||||| ||| || || ||||||||||| || | ||| || ||||||||| | Sbjct 201 AATTAAAATCTGTATGTAGTCCTTCATCTCTACTTATTAATTCATTACTAAATGTTAAAC 142 Query 13933 C-TGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATG--ACC-CGGAAAAG 13988 | || || || | ||||||| |||||||| || ||| |||| | ||| | | || Sbjct 141 CATGTAATTTAT-TTTGTTTTTTAAACCAAAAAATAGCA-CAAAAGCTACCACTG--AAT 86 Query 13989 AATATTCCCTCAAC 14002 |||||||| ||||| Sbjct 85 AATATTCCTTCAAC 72 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479573551570400