Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F000576715.1_202014-02-03] 25,756 sequences; 16,303,117 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq5544 143 3e-29 seq6281 122 8e-23 >seq5544 Length=836 Score = 143 bits (158), Expect = 3e-29 Identities = 272/396 (69%), Gaps = 6/396 (2%) Strand=Plus/Minus Query 13840 ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTG 13899 ||||||||| |||||| | ||| ||||| | | | || |||| || |||| Sbjct 821 ATCCATTTTGCTGCCCATAATGCTTTATTTTTTACAGCAGGGATATTTTCTATAGCATGA 762 Query 13900 AATAAATGT--TCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACA 13957 ||||||| | || |||| ||| | || ||| || ||||||| | ||| ||||| Sbjct 761 AATAAATTTAATCTTTCTTTTTCATCTTT--AATATAATTATCAATTAATAAACTATAGG 704 Query 13958 TTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACC 14017 |||| || || || ||||||| |||||| |||||| |||||| | | ||||||| Sbjct 703 TTTCTGAATGAATATTTTCTACAGCTATTTGAAAAGAATAAAATTTTTTTGCTTCTGTTA 644 Query 14018 ATTGTACCTCCGAGTAAAATCTTTCT-GCCAAGTTTTCATTAACAATACCATCACTAGCT 14076 ||| ||||| ||||| || || ||||| || || || ||||||||||| ||| Sbjct 643 TTTGAACCTCTCTTAAAAAT-TTACTAGCCAAATTCTCTAATACTATACCATCACTTGCT 585 Query 14077 GCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAA 14136 ||||||||||| || | | || ||||| | || ||| | | || | ||| | || Sbjct 584 GCAAAAAATGCTAACACATGCTTTATAAAATGTTTCTCATTGTCATTCAATTTCTCAAAA 525 Query 14137 TCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTT 14196 || |||||| |||| | ||| | ||| || |||||||||| ||| ||||||| Sbjct 524 TCTTTTAAATCGCTAGATAAATCAATTTCTTCTGCTGTCCAAAATGAAGCTTCAGCTTTC 465 Query 14197 TTATACATTACCCATATTTCTTTATATAATATAGGA 14232 || || | |||| | ||| ||||||||| ||| Sbjct 464 TTGTAAAAATCCCAAACTTCAGGATATAATATTGGA 429 >seq6281 Length=778 Score = 122 bits (134), Expect = 8e-23 Identities = 293/429 (68%), Gaps = 12/429 (3%) Strand=Plus/Minus Query 13368 TTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATT 13427 ||||||||| || || ||||| || |||||||| ||||| |||| ||||| || Sbjct 494 TTTTTGATAATCTGCGACCCTTTTCTCGAAAAAGTTTGTTTTTCCTTGAAGTGAAATTAA 435 Query 13428 TTCCATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAA 13487 ||||| ||| |||||||||| |||| || | |||| || |||| | ||| Sbjct 434 GTCCATCCAATTGAATGGATTTTTTGAATGGAAAATTTTAGAGCATCCTAAACATTCTAA 375 Query 13488 TAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATC-ACAATTCATACCTATTA 13546 ||||||||| |||| ||| || |||||||||||||| || || | ||||||||||||||| Sbjct 374 TAATCTATCTGCAACAAATTCTATATATTGAGACAT-AAGTCTAGAATTCATACCTATTA 316 Query 13547 GTTTTACA--GGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTAT 13604 | ||| | ||| || | | || ||| | |||| | ||||| || || | Sbjct 315 -AATCACATGGTAATGAT-TCACATATAAAAGATCTTTCAACTTCTACAGCTTCTTTAAC 258 Query 13605 AATAATCTTAATAATGTCAT-TAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACG 13663 |||| | | | || | | | |||| ||| | | | || ||||||| || Sbjct 257 AATATTTTGTACCATTTGTTCTGGAAGTTTATTATCTAATA-AACTATAAATTAAGCAAT 199 Query 13664 CAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCC-T 13722 |||||| ||| || || ||||||||||| || | ||| || ||||||||| || | Sbjct 198 TAAAATCTGTATGTAGTCCTTCATCTCTACTTATTAATTCATTACTAAATGTTAAACCAT 139 Query 13723 GGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGAT-CCGGAAAAGAATAT 13781 | || || | ||||||| |||||||| || ||| | || | | || || ||||| Sbjct 138 GTAATTTAT-TTTGTTTTTTAAACCAAAAAATAGCA-CAAAAGCTACCACTGAATAATAT 81 Query 13782 TCCCTCAAC 13790 ||| ||||| Sbjct 80 TCCTTCAAC 72 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478434718335840