Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F000576715.1_202014-02-03] 25,756 sequences; 16,303,117 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq5544 168 9e-37 >seq5544 Length=836 Score = 168 bits (186), Expect = 9e-37 Identities = 276/398 (69%), Gaps = 0/398 (0%) Strand=Plus/Minus Query 42236 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG 42295 |||| ||||| ||| ||||| || || ||||||||| ||| || ||||||| Sbjct 827 TCATTAATCCATTTTGCTGCCCATAATGCTTTATTTTTTACAGCAGGGATATTTTCTATA 768 Query 42296 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTA 42355 |||| ||| | || | |||| || |||||||| ||| |||| || || | |||| Sbjct 767 GCATGAAATAAATTTAATCTTTCTTTTTCATCTTTAATATAATTATCAATTAATAAACTA 708 Query 42356 TACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCG 42415 || ||||||||||||| ||||| | || || ||||| || || | | || || Sbjct 707 TAGGTTTCTGAATGAATATTTTCTACAGCTATTTGAAAAGAATAAAATTTTTTTGCTTCT 648 Query 42416 GTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTG 42475 || | || || ||| | ||||| ||| ||||| || ||||| || ||||| Sbjct 647 GTTATTTGAACCTCTCTTAAAAATTTACTAGCCAAATTCTCTAATACTATACCATCACTT 588 Query 42476 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTC 42535 ||||||||||| || || ||||| |||||||||| ||| || | | ||||| | Sbjct 587 GCTGCAAAAAATGCTAACACATGCTTTATAAAATGTTTCTCATTGTCATTCAATTTCTCA 528 Query 42536 CAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCC 42595 |||| || | ||| |||||| ||| | ||||||| | ||||||||||| ||||| || Sbjct 527 AAATCTTTTAAATCGCTAGATAAATCAATTTCTTCTGCTGTCCAAAATGAAGCTTCAGCT 468 Query 42596 TTTTTATACATATTCCAGATATCATGATATTGAATTGG 42633 || || || | || ||| | ||| ||||| ||||| Sbjct 467 TTCTTGTAAAAATCCCAAACTTCAGGATATAATATTGG 430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670923126734560