Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F000576715.1_202014-02-03] 25,756 sequences; 16,303,117 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq5544 150 2e-31 seq6281 113 4e-20 >seq5544 Length=836 Score = 150 bits (166), Expect = 2e-31 Identities = 255/364 (70%), Gaps = 4/364 (1%) Strand=Plus/Minus Query 13331 ATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAAC-GCAGTTCATATTTTCTATTGCGTT 13389 ||||| ||| ||||| |||||| | ||| || |||| ||||||||||| || | Sbjct 821 ATCCATTTTGCTGCCCATAATGCTTTATTTTTTACAGCAGGG-ATATTTTCTATAGCATG 763 Query 13390 AAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACAT 13449 |||||||| | |||| || ||| ||||||| |||| || ||||| ||||| | Sbjct 762 AAATAAATTTAATCTTTCTTTTTCATCTTTAATATAATTATCAATTAATAAACTATAGGT 703 Query 13450 TTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATAC 13509 |||||||||||||||||| | |||||||| ||| |||||| | | || |||| || Sbjct 702 TTCTGAATGAATATTTTCTACAGCTATTTGAAAAGAATAAAATTTTTTTGCTTCTGTTAT 643 Query 13510 CTGAACTTCGGAGTAAAATCTTTCT-GCTAAGTTTTCGTTAACTATCCCGTCACTAGCAG 13568 ||||| || ||||| || || || || || || ||||| || ||||| || | Sbjct 642 TTGAACCTC-TCTTAAAAATTTACTAGCCAAATTCTCTAATACTATACCATCACTTGCTG 584 Query 13569 CaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAACTTTAACCAAT 13628 ||||||| || | | ||||| ||||| | ||| || || || ||| || ||| Sbjct 583 CAAAAAATGCTAACACATGCTTTATAAAATGTTTCTCATTGTCATTCAATTTCTCAAAAT 524 Query 13629 CTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCT 13688 || ||||| | |||||||| | || || | |||||||| ||||| |||| |||| Sbjct 523 CTTTTAAATCGCTAGATAAATCAATTTCTTCTGCTGTCCAAAATGAAGCTTCAGCTTTCT 464 Query 13689 TATA 13692 | || Sbjct 463 TGTA 460 >seq6281 Length=778 Score = 113 bits (124), Expect = 4e-20 Identities = 306/459 (67%), Gaps = 16/459 (3%) Strand=Plus/Minus Query 12859 TTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATT 12918 ||||||||| || || ||||| || ||||||||||||||||||| | ||||| Sbjct 494 TTTTTGATAATCTGCGACCCTTTTCTCGAAAAAGTTTGTTTTTCCTTGAAGTGAAATTAA 435 Query 12919 TTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTA---CACCCTAATTCTAG 12975 ||||| ||| ||| |||||||| | ||| | | ||||| || ||||| | Sbjct 434 GTCCATCCAATTGAATGGATTTTTTG---AATGGAAAATTTTAGAGCATCCTAAACATTC 378 Query 12976 TAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATC-ACAGTTCATTCCTA 13034 ||| ||||| || |||||||| ||||| || || || ||| || | | ||||| |||| Sbjct 377 TAATAATCTATCTGCAACAAATTCTATATATTGAGACA-TAAGTCTAGAATTCATACCTA 319 Query 13035 TTAATTTTACA-GGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATA 13093 |||| | ||| || | | ||| || ||| | |||| | || || ||||| || Sbjct 318 TTAA-ATCACATGGTAATGATTCACATATAAAAGATCTTTCAACTTCTACAGCTTCTTTA 260 Query 13094 ACTATGTCTCTTA--TTACGTTCTCTAA-TGGAGGATTTGATAGATGCTTAAACATCATA 13150 || || | | || | ||||| || | | || | ||| | || | || | Sbjct 259 ACAATATTTTGTACCATTTGTTCTGGAAGTTTATTATCTAATAAA---CTATAAATTAAG 203 Query 13151 CATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGA 13210 || |||||| || | |||||||||||||||||||| || || |||||||| | Sbjct 202 CAATTAAAATCTGTATGTAGTCCTTCATCTCTACTTATTAATTCATTACTAAATGTTAAA 143 Query 13211 CCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaT 13270 || | | | ||||||||| |||||| |||||| ||| ||| || ||| Sbjct 142 CCATGTAATTTATTTTGTTTTTTAAACCAAAAAATAGCACAAAAGCTACCACTGAATAAT 83 Query 13271 ATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCA 13309 ||||||||||| |||| |||| | ||||||| || Sbjct 82 ATTCCTTCAACACATGCATTAGCTACTATCCTTTCAGCA 44 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430847114085912