Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F000576715.1_202014-02-03] 25,756 sequences; 16,303,117 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq5544 109 1e-18 >seq5544 Length=836 Score = 109 bits (120), Expect = 1e-18 Identities = 245/359 (68%), Gaps = 8/359 (2%) Strand=Plus/Plus Query 268760 GCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATTG-GAAAAA 268818 ||||| |||||||| | ||||||| | ||| | ||| || |||| ||||| || ||| Sbjct 475 GCTTCATTTTGGACAGCAGAAGAAATTGATTTATCTAGCGATTTAAAAGATTTTGAGAAA 534 Query 268819 TTTAAA-ACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGCAGTTAGTG 268877 || || || | ||||| | |||||| || | | || |||||||||| |||| Sbjct 535 TTGAATGACAATGAGAAACAT--TTTATAAAGCATGTGTTAGCATTTTTTGCAGCAAGTG 592 Query 268878 ATGGTATCGTTAACGAAAATCTAG-TAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAA 268936 ||||||| || || ||| | | ||| || || | | ||||| || || | ||| Sbjct 593 ATGGTATAGTATTAGAGAATTTGGCTAGTAAATTTTTAAGA-GAGGTTCAAATAACAGAA 651 Query 268937 GCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGT 268996 || | | ||||| || || |||||| ||||||||||||||||||| | || ||| Sbjct 652 GCAAAAAAATTTTATTCTTTTCAAATAGCTGTAGAAAATATTCATTCAGAAACCTATAGT 711 Query 268997 CTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAGACTATTTTCTTCTATG 269056 ||||||| |||| |||||| | ||| | || |||| || ||||| | |||| Sbjct 712 TTATTAATTGATAATTATATTAAAGATGAAAAAGAAAGATTAAATTTATTTCATGCTATA 771 Query 269057 AGAACTATGGACTG-TGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAAACGATA 269114 || ||| ||| ||| | ||| ||| | |||||| |||||||| || |||| Sbjct 772 GAAAATAT-CCCTGCTGTAAAAAATAAAGCATTATGGGCAGCAAAATGGATTAATGATA 829 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151018439967248