Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F000576715.1_202014-02-03] 25,756 sequences; 16,303,117 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq11001 185 1e-41 seq1776 176 5e-39 seq5887 98.7 1e-15 >seq11001 Length=546 Score = 185 bits (204), Expect = 1e-41 Identities = 279/389 (72%), Gaps = 6/389 (2%) Strand=Plus/Minus Query 6840 ATAAATATGAGCATCTCCTAGCGTATGAATAAATTCACCTGGTTTCATATCAACAG-CTT 6898 ||||| ||| |||| ||||| || |||||||| | |||| || || | ||| ||| Sbjct 386 ATAAACATGCGCATTTCCTAAAACGTGTATAAATTCGGCAGGTTGCAAATTA-CAGACTT 328 Query 6899 GAGCAATTAAATATGTTAATAATGCATAAGAAGCTACATTAAAAGGTACACCTAATCCCA 6958 | ||||| | || || || | | ||||||||| | |||||||||||| |||| ||| | Sbjct 327 GTGCAATCATATGAGTAAAAATAGAATAAGAAGCAATATTAAAAGGTACTCCTAGTCCTA 268 Query 6959 TATCTGCTGATCTTTGATAACATTG-ACAAGATAAAATATTGTCTATAGCATAAAATTGA 7017 ||| ||| |||||||| ||| ||| ||||| | || | | ||||||||||| Sbjct 267 AATCACATGACCTTTGATA-CATAATACATGATAATTTTCCATCGAAAACATAAAATTGA 209 Query 7018 CACAATACATGACATGGAGGTAAAACAGCCTGATCTATATCAGATGGATTCCAAGCAGTC 7077 || || | |||||| |||||||| | || || | ||| | |||||| ||| | Sbjct 208 CATAAAATATGACAAGGAGGTAATGCCATTTGGTCAAGATCTTTTACATTCCATGCACAC 149 Query 7078 ATTAAAATACGTCTATCATTTGGATTTGTTTTTAATTTTGTT-ATAATTATTTGTAATTG 7136 | | ||| | |||| | |||| ||||||||| || || || ||| |||||| Sbjct 148 AAAAGAATTCTTCTACTTGTAGGATCA-TTTTTAATTAAATTTATTATATTTTTTAATTG 90 Query 7137 ATCTATACCCTGACCTTCATAATTAGTATGACAATTTATATAATTAGCTCCAAAATGTCT 7196 ||| | ||| | | |||||||||| ||| |||| |||| | |||||| |||||||| Sbjct 89 ATCAACACCTTTATTTTCATAATTATCATGCATATTTGTATATTCAGCTCCGAAATGTCT 30 Query 7197 CCATTGAAACCCATAAATAGGACCTAAAT 7225 ||||||||| ||||||||||| ||||||| Sbjct 29 CCATTGAAAACCATAAATAGGTCCTAAAT 1 >seq1776 Length=1436 Score = 176 bits (194), Expect = 5e-39 Identities = 407/605 (67%), Gaps = 25/605 (4%) Strand=Plus/Minus Query 164392 AATTGGAATTTTGAAGAAATGGGAGTAGGTGGACTAGATCGAGAATTTTCTCTTATTTTC 164451 |||| |||||||||||| | || |||| | | ||||| ||||||| || || Sbjct 622 AATTTCAATTTTGAAGAATTAGGTATAGGAGCATTAGATGAAGAATTTAAAACAATATTT 563 Query 164452 AGACGAGCATTTGCTTCTAGATCAGTTCCTATCGAAATAATaaaaaaaTTAGGCTGTAAA 164511 ||| || |||||||| ||| | ||| | | || |||||| ||||||| | |||| Sbjct 562 AGAAGAACATTTGCTAGTAGGATATATCCAAATTATATTATAAAACAATTAGG-TATAAA 504 Query 164512 -CATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTCG 164570 ||| |||| || || ||||| |||| ||||||||| |||||||| ||||| ||| | Sbjct 503 GCATGTAAAGGGTATGATATTATATGGTCCTCCTGGTACAGGTAAAACGTTAATAGCTAG 444 Query 164571 ATGCATTGCTCAAGCTTTTAAAT---CGCGACCCGTTAAAATTGTTAATGGTCCTGAATT 164627 | || | ||| || ||| || || ||| ||||| |||||||||| ||| | Sbjct 443 ACAAATAG-GGAAGACATTGAATGCACGAGAACCG--AAAATAATTAATGGTCCAGAAAT 387 Query 164628 ATTGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTGA 164687 ||| || |||||||| || | ||||||| ||| || | || || ||| | || || || Sbjct 386 ATTAAATAAATATGTTGGACAATCAGAAGAAAATATTCGTAATTTATTTAAAGACGCAGA 327 Query 164688 AGAAGAACA-AAAGAAAGCAGGTTTAGCTAGTAAATTACATGTTATTGTTTTTGATGAGA 164746 | ||| | ||| |||| | | | | ||||||| | || | || ||||| | Sbjct 326 AATGGAATATAAACAAAGTGGCGAGAATTCAT-TATTACATATAATAATATTAGATGAAA 268 Query 164747 TAGATGCTCTTTGCAAA--------AAACG-TGGTGATAATATTA------TTCATGATG 164791 | |||||| | || | | ||| | ||| | || || | ||||| Sbjct 267 TTGATGCTATATGTAGACAGAGAGGAAATGCAGGTTCAAGTAGTACTGGGGTAAATGATA 208 Query 164792 CAGTGGTTAATCAGTTGCTTTCTAAAATAGATGGTGTAGAATCCTTAAATAATATTTTAA 164851 || || ||||| || || |||||||| ||||| ||| | ||||||||||| || Sbjct 207 GTGTAGTAAATCAATTACTATCTAAAATTGATGGAGTAAATAGTTTAAATAATATCTTGT 148 Query 164852 TTGTAGGTATGACCAACCGACCTGATTTAATTGATGATGCTTTATTACGACCTGGTCGAT 164911 | | || ||||| || || |||||||| ||||| ||||| | || ||||| ||| Sbjct 147 TAATTGGAATGACAAATAGAATAGATTTAATAGATGAAGCTTTGCTTCGTCCTGGAAGAT 88 Query 164912 TAGAATTGAAAATAGAAATAGGATTACCCGACAAAGAAGGACGCCTTCAAATTTTAAAAG 164971 | || || | ||||||||| ||||| | |||||||| | ||||||| ||||| Sbjct 87 TTGAGTTACATATAGAAATATCCTTACCAAATAAAGAAGGGAGAATTCAAATATTAAATA 28 Query 164972 TTCAT 164976 ||||| Sbjct 27 TTCAT 23 >seq5887 Length=807 Score = 98.7 bits (108), Expect = 1e-15 Identities = 221/324 (68%), Gaps = 16/324 (5%) Strand=Plus/Minus Query 7106 TTTTTAATTTTGTT-ATAATTATTTGTAATTGATCTATACCCTGACCTTCATAATTAGTA 7164 ||||||||| || || || ||| ||||||||| | || | | |||||||||| | Sbjct 802 TTTTTAATTAAATTTATTATATTTTTTAATTGATCCACTCCTTTATTTTCATAATTATCA 743 Query 7165 TGACA-ATTTATATAATTAGCTCCAAAATGTCTCCATTGAAACCCATAAATAGGACCTAA 7223 | ||| |||| |||| | ||| || ||||||||||||||||| ||||||||||| ||||| Sbjct 742 T-ACATATTTGTATATTCAGCACCGAAATGTCTCCATTGAAAACCATAAATAGGTCCTAA 684 Query 7224 ATCACCTTCTTCACGATG--ATTAAATCCTAATCGATTTAAATTAGATT---TTGATCCA 7278 ||| |||| | ||| || | | ||| | || ||| | ||| | | ||| Sbjct 683 ATCGTTAACTTCTCTATGAAATAATTTTCTATT--ATCTAA---AAATTCCCTAGTACCA 629 Query 7279 TAAGCATCCCAAATATGTACAGAtttttttGATAAATTTAAAGAATTTGTAGATCCTTTA 7338 | ||| ||||| || |||| || ||| | | | | |||||| |||| || Sbjct 628 TTAGCTTCCCATATCCTTACATTCTTATTTAACAGCGTATTACCATTTGTTTCTCCTCTA 569 Query 7339 AGGAACCATAAAAGTTCTTCTACTATTCCACGCCAAAACATTCTTTTTGTAGTGAATAAA 7398 | ||||| | | |||||| | ||||| | | || | | | |||||||| ||||| Sbjct 568 ATAAACCAAAGCAATTCTTCAATAATTCCTCTTAAGAATAATTTCTTTGTAGTTAATAAT 509 Query 7399 GGGA---ATGTACTTAAATCATAT 7419 |||| || |||||||||| || Sbjct 508 GGGAAATATTGACTTAAATCAAAT 485 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595680159009600