Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F000576715.1_202014-02-03] 25,756 sequences; 16,303,117 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq6281 149 7e-31 seq5544 134 1e-26 >seq6281 Length=778 Score = 149 bits (164), Expect = 7e-31 Identities = 338/498 (68%), Gaps = 19/498 (4%) Strand=Plus/Minus Query 21184 TTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGA 21243 |||||||||||| || ||||| |||||||| ||||| ||||||| | ||| || | Sbjct 494 TTTTTGATAATCTGCGACCCTTTTCTCGAAAAAGTTTGTTTTTCCTTGAAGTGAAATTAA 435 Query 21244 TTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGATAA 21303 ||||| ||| |||||||||| || | || |||||| || || | | ||| Sbjct 434 GTCCATCCAATTGAATGGATTTTTTGAATGGAAAATTTTAGAGCATCCTAAACATTCTAA 375 Query 21304 TAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAA 21363 |||||||||||| |||||||||||||||||| |||| | | | |||||||||| || || Sbjct 374 TAATCTATCTGCAACAAATTCTATATATTGAGACATAAGTCTAGAATTCATACCTATTAA 315 Query 21364 TTTTACA-GGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTA 21422 | ||| || | | || | ||||||| |||| | || ||||| || | Sbjct 314 -ATCACATGGTAATGATTCACATATAAAAGATCTTTCAACTTCTACAGCTTCTTTAACAA 256 Query 21423 TATTTATTATCCTAGATGTACTAGGGGGATACAA--TAATTGTTTAAACATCAAACATGC 21480 |||| || | | | ||| || | | || | |||| || | || || || Sbjct 255 TATT--TTGTACCATTTGTTCTGGAAGTTTATTATCTAATAAACTATAAATTAAGCAATT 198 Query 21481 AAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACC-GG 21539 |||||| ||| | |||||||| |||||||||||||||||| |||||||||||| | Sbjct 197 AAAATCTGTATGTAGTCCTTCATCTCTACTTATTAATTCATTACTAAATGTTAAACCATG 138 Query 21540 GCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCT-CCTGAAAAGAAAATG 21598 ||| || | | ||||| |||||||| || | | |||| ||| || || || || Sbjct 137 TAATTTATTTTGT-TTTTTAAACCAAAAAATAG-CACAAAAGCTACCACTGAATAATATT 80 Query 21599 CCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATG---TAGATTCTTTATCCAAT 21655 || ||||| ||| || |||| | |||| | ||| ||| || ||| Sbjct 79 CCTTCAACACATGCATTAGCTACTATCCTTTCAGCAAATGAATTAGTATCATTA------ 26 Query 21656 ATCCATTTTTCTGCCCAT 21673 ||||||||| |||||||| Sbjct 25 ATCCATTTTGCTGCCCAT 8 >seq5544 Length=836 Score = 134 bits (148), Expect = 1e-26 Identities = 202/287 (70%), Gaps = 0/287 (0%) Strand=Plus/Minus Query 21766 ACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGC 21825 |||||| |||| ||||| |||||||||| ||||| ||||| ||||| | |||| Sbjct 711 ACTATAGGTTTCTGAATGAATATTTTCTACAGCTATTTGAAAAGAATAAAATTTTTTTGC 652 Query 21826 CTCTGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATC 21885 |||| ||||||||| ||||| |||||| || || |||||| ||||| Sbjct 651 TTCTGTTATTTGAACCTCTCTTAAAAATTTACTAGCCAAATTCTCTAATACTATACCATC 592 Query 21886 ACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTT 21945 ||| || ||||||||||| || | || |||||||||| | || || || | ||||| Sbjct 591 ACTTGCTGCAAAAAATGCTAACACATGCTTTATAAAATGTTTCTCATTGTCATTCAATTT 532 Query 21946 TTTCCAATCTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAAT 22005 | ||||| |||||| | |||||||| | |||||| | ||||||||| ||| Sbjct 531 CTCAAAATCTTTTAAATCGCTAGATAAATCAATTTCTTCTGCTGTCCAAAATGAAGCTTC 472 Query 22006 AGCCTTTTTATACATAATCCAGATATCATTATATATTATTGGAAATA 22052 ||| || || || | | ||| | ||| ||||| ||||||| ||| Sbjct 471 AGCTTTCTTGTAAAAATCCCAAACTTCAGGATATAATATTGGATATA 425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531729554537440