Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F000576715.1_202014-02-03] 25,756 sequences; 16,303,117 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq5544 165 1e-35 >seq5544 Length=836 Score = 165 bits (182), Expect = 1e-35 Identities = 281/403 (70%), Gaps = 11/403 (3%) Strand=Plus/Minus Query 33475 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG 33534 |||| ||||| ||| ||||| || || ||||||||| ||| || ||||||| Sbjct 827 TCATTAATCCATTTTGCTGCCCATAATGCTTTATTTTTTACAGCAGGGATATTTTCTATA 768 Query 33535 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTA 33594 |||| ||| | || | |||| || |||||||| |||| |||| || || | |||| Sbjct 767 GCATGAAATAAATTTAATCTTTCTTTTTCATCTTTAATATAATTATCAATTAATAAACTA 708 Query 33595 TACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCG 33654 || |||| |||||||| ||||| | || || ||||| || || | | || || Sbjct 707 TAGGTTTCTGAATGAATATTTTCTACAGCTATTTGAAAAGAATAAAATTTTTTTGCTTCT 648 Query 33655 GTAATCTGTACTTCTGTACAAAATCGTTCC--GCCAAATTTTCATTCACTATTCCGTCAC 33712 || || || || ||| | ||||| || | |||||||| || ||||| || |||| Sbjct 647 GTTATTTGAACCTCTCTTAAAAAT--TTACTAGCCAAATTCTCTAATACTATACCATCAC 590 Query 33713 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTA 33771 | ||||||||||| || || ||||| |||||||||| ||| || | || || | ||| Sbjct 589 TTGCTGCAAAAAATGCTAACACATGCTTTATAAAATGTTTCTCAT-TGTCATTCAATTTC 531 Query 33772 TTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCT 33831 | |||| || | ||| |||||| ||| | |||||| ||||||||||||| || || Sbjct 530 TCAAAATCTTTTAAATCGCTAGATAAATCAATTTCTTCTGCTGTCCAAAATGAAGCTTCA 471 Query 33832 GCCTTTTTATACATGTTCCAGATGTC-----ATAATATTGGAT 33869 || || || || | | ||| | || |||||||||||| Sbjct 470 GCTTTCTTGTAAAAATCCCAAACTTCAGGATATAATATTGGAT 428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622746642148960