Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F000576715.1_202014-02-03] 25,756 sequences; 16,303,117 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq5544 136 4e-27 >seq5544 Length=836 Score = 136 bits (150), Expect = 4e-27 Identities = 280/412 (68%), Gaps = 6/412 (1%) Strand=Plus/Minus Query 93272 ATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTA 93331 ||||||||| ||||| ||||| || || | | ||| | |||| ||||| | | Sbjct 821 ATCCATTTTGCTGCCCATAATGCTTTATTTTTTACAGCAGGGATATTTTCTATAGCATGA 762 Query 93332 AATAGGT--AATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACA 93389 |||| | ||||| || | | |||| || || |||| ||||| | | ||| Sbjct 761 AATAAATTTAATCTTTCTTTTTC--ATCTTTAATATAATTATCAATTAATAAACTATAGG 704 Query 93390 TTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGA 93449 |||| ||||| | ||| || | || ||||| || || || | | ||||| || | Sbjct 703 TTTCTGAATGAATATTTTCTACAGCTATTTGAAAAGAATAAAATTTTTTTGCTTCTGTTA 644 Query 93450 TCTGCACTTCTTGAGAAAATCTCTCTA-CGAGATTTTCATTGACTATACCATCGGATGCT 93508 | || || ||| ||||| | ||| | | ||| || ||||||||||| |||| Sbjct 643 TTTGAACCTCTCTTAAAAATTTA-CTAGCCAAATTCTCTAATACTATACCATCACTTGCT 585 Query 93509 GCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAA 93568 |||||||| || || | ||||||||||||||||||||||| || || | || || || Sbjct 584 GCAAAAAATGCTAACACATGCTTTATAAAATGTTTCTCATTGTCATTCAATTTCTCAAAA 525 Query 93569 TCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTT 93628 || || ||| | || | ||| | |||||| | |||||||| || ||||| ||||| Sbjct 524 TCTTTTAAATCGCTAGATAAATCAATTTCTTCTGCTGTCCAAAATGAAGCTTCAGCTTTC 465 Query 93629 TTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGAT 93680 ||||| | |||||| | || ||||| |||||| ||| |||||||| Sbjct 464 TTGTAAAAATCCCAAACTTCAGGATATAATATTGGATATAAAGTAAAACGAT 413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556681518665440