Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F000576715.1_202014-02-03] 25,756 sequences; 16,303,117 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq3755 219 3e-51 seq9540 100 2e-15 seq1017 96.9 3e-14 seq996 87.8 1e-11 seq1904 86.0 5e-11 >seq3755 Length=1024 Score = 219 bits (242), Expect = 3e-51 Identities = 360/513 (70%), Gaps = 17/513 (3%) Strand=Plus/Minus Query 517129 TTTTTTCTTGTT-ATCTGCTTCTTCAAATTCTTTAGCTTCTCTAATCATTCTCTCAATTT 517187 |||| | ||||| |||| |||||| | ||| || || || | | ||| | || || | Sbjct 507 TTTTATTTTGTTCATCTTCTTCTTTATATTTTTCTGCATCATTGACCATACGATCGATAT 448 Query 517188 GATCTTCAGAGAATCTTCCGCGATTATTAGTAATAGTAATATTCTTGGATTTGTTT---- 517243 ||| | || |||||||| || ||| ||||||||||| ||| ||||||| Sbjct 447 CATCCTTTGATAATCTTCCTTTATCATTTGTAATAGTAAT----TTGATTTTGTTTACCC 392 Query 517244 GTTGATTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACT 517303 || |||||| || || ||||| || |||||||| ||||| | ||||||||| ||| Sbjct 391 GTACCTTTATCTAATGCTGTTACATTTAGTATACCATTAGCATCAATATCAAATGTAACT 332 Query 517304 TCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGA 517363 |||||||| || || | ||| | || |||||||| ||||| || | |||| |||| | Sbjct 331 TCAATTTGTGGCACACTTCTTGGTGCTGGTGGGATACCTTCTAATTGAAATTTTCCTAAT 272 Query 517364 TTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTT 517423 ||||||||||||||| || || ||| || || | | ||| || ||| | | | Sbjct 271 AAATTATTATCTTTAGTTAAGGATCTTTCTCCTTCATACACTTGAATTAAAACACCTGGT 212 Query 517424 TGATTATCTGAATAAGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTA 517483 |||||||| | ||| || ||||| | | |||||| || || ||||| ||||| Sbjct 211 TGATTATCAGCATATGTAGTAAAGATTTGATTTTTTTTGGTTGGTATAGTTGTATTTCTT 152 Query 517484 TCAATAATATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACA 517543 ||||| | || ||||| | |||||||||||||||||| || | || | ||| |||| Sbjct 151 TCAATTAATTTTGTCATGACACCACCTGCTGTTTCTAAGCCTAATGACAATGGACAGACA 92 Query 517544 TCAACTAGGACAATA---TTTTGA-AGTTTTTCATCAGTTTGACCAACAAGAATAGCTGC 517599 || | || | |||| ||||| || | | || | | || | ||||||||| Sbjct 91 TCTAATA--ATAATAAGTCTTTGACAGCTGATGATTGATCT--CCTGATAAAATAGCTGC 36 Query 517600 TTGAATAGCAGCACCATATGCAACAGCTTCATC 517632 ||| | ||| ||||||||||||||||||||||| Sbjct 35 TTGTACAGCTGCACCATATGCAACAGCTTCATC 3 >seq9540 Length=598 Score = 100 bits (110), Expect = 2e-15 Identities = 143/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 303736 AGTCCACCATCTCTTGATCTACCTTCTGGCGCTTGTCTTGTAAGTAACTGTGTTGGTCCA 303795 || ||||||||||||||||| ||||||| | ||||||||||| | | |||||| Sbjct 337 AGACCACCATCTCTTGATCTTCCTTCTGTTGGTTGTCTTGTAATCATAGTTAATGGTCCT 396 Query 303796 CGAGCGCGTGAGTGGGCCTTGTCGCCTACCATTTGTTTCAATCTCTGATAATATGTCGGA 303855 | | | || || || || | ||||| ||||| ||||| |||||||| || || Sbjct 397 CTACTTCTTGCATGTATTTTATCTTCAACCATATGTTTTAATCTTTGATAATAAGTTGGT 456 Query 303856 CCAATAAAAATTTT-AACTGGTAATTTTTTACCATTCATTCCATTATACATAGTTTCATT 303914 |||||||| ||||| ||| ||| || | || || ||||||||| | ||||||| Sbjct 457 CCAATAAATATTTTGGACT-TTAACATTCTTCCGTTATGTCCATTATATAACATTTCATT 515 Query 303915 ACCCCATTCTTCATAACCA 303933 || ||| |||||||||| Sbjct 516 TCCATATTTTTCATAACCA 534 >seq1017 Length=1759 Score = 96.9 bits (106), Expect = 3e-14 Identities = 89/110 (81%), Gaps = 2/110 (2%) Strand=Plus/Plus Query 200573 TTCATTATAATGATGAGGAAATTTCAAATCGATTCCACCAAAATGAATATCAATACTATT 200632 |||||||| ||||||||||||| | ||||| || || ||| ||||||||| | | || Sbjct 1136 TTCATTATCATGATGAGGAAATCTTAAATCAATACCTCCACTATGAATATCTAAAACATC 1195 Query 200633 TCCTAATGT-TTTCTTGATCATGGCTGAACATTCAATATGCCAACCAGGT 200681 ||||||| | || |||| ||| | ||||||||||||||||||||| ||| Sbjct 1196 TCCTAATATATTACTTG-CCATAGTTGAACATTCAATATGCCAACCTGGT 1244 >seq996 Length=1774 Score = 87.8 bits (96), Expect = 1e-11 Identities = 111/150 (74%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 671660 GAATTTTTCTTCCAAGTAATGGCAGGTCGTGAAGGTATTATTAATACGGCTATTAAAACT 671719 ||| | || ||||| | ||||| |||| | |||||||||||| |||| || |||||| Sbjct 176 GAAGTATTTTTCCATGCAATGGGAGGTAGAGAAGGTATTATTGATACTGCATGTAAAACA 117 Query 671720 GCTGATACTGGTTATATTCAAAGAAAACTTGTTAAAATGC-TCGAAGATATCAAACAAGA 671778 |||| || || ||||| ||||||| | || ||||| | | |||||| | | | | Sbjct 116 TCTGAAACAGGGTATATACAAAGAAGA-TTAATAAAAGCCATGGAAGATGTTATGGTACA 58 Query 671779 ATATGATGGTACAGTAAGAAATGCAAATGG 671808 ||||||| | || ||||||||| || |||| Sbjct 57 ATATGATAGAACTGTAAGAAATTCATATGG 28 >seq1904 Length=1198 Score = 86.0 bits (94), Expect = 5e-11 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 818527 TAATTTTCAATTATACCATTGTGTATTAATGAGAAACGTCCACTAGCATCAAAATGAGGA 818586 |||||||||||||||||||| || | || | |||| ||| | ||||| ||| ||| Sbjct 369 TAATTTTCAATTATACCATTATGAACTATACTTATACGTTCACCATAATCAACATGTGGA 310 Query 818587 TGAGCGTTCTCAATAGTTTTTTCACCATGCGTTGCCCATCTAGTATGACCAATTGCTATA 818646 ||||| || ||| |||||| ||||| |||||||||| ||||| ||||| ||||| Sbjct 309 TGAGCATTTTCATCAGTTTTACATCCATGTGTTGCCCATCGTGTATGTGCAATTCCTATA 250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3779544302439736