Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F000576715.1_202014-02-03] 25,756 sequences; 16,303,117 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq3755 159 4e-34 seq2478 147 3e-30 seq9932 143 3e-29 seq6281 138 1e-27 seq6649 95.1 2e-14 seq170 86.0 8e-12 seq5544 82.4 1e-10 >seq3755 Length=1024 Score = 159 bits (176), Expect = 4e-34 Identities = 337/499 (68%), Gaps = 8/499 (2%) Strand=Plus/Minus Query 6568 TTCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGA 6627 ||||||||| |||||||| ||||| ||||| | |||||| || || || || || || Sbjct 497 TTCATCTTCTTCTTTATATTTTTCTGCATCATTGACCATACGATCGATATCATCCTTTGA 438 Query 6628 TAATCTCCCCTTATCATTCGTAATCGTAATCT--TTTCGGATTTACCCGAGGCCTTATCT 6685 |||||| || |||||||| ||||| ||||| | ||| | |||||||| | |||||| Sbjct 437 TAATCTTCCTTTATCATTTGTAATAGTAATTTGATTTTG--TTTACCCGTACCTTTATCT 380 Query 6686 TCAGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGT 6745 || ||||||| | |||||||| ||||||| ||| || | || | ||||||||| Sbjct 379 AATGCTGTTACATTTAGTATACCATTAGCATCAATATCAAATGTAACTTCAATTTGTGGC 320 Query 6746 GTACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCC 6805 || || ||||| | ||| ||||| ||| | |||| | || | |||| | ||||| Sbjct 319 ACACTTCTTGGTGCTGGTGGGATACCTTCTAATTGAAATTTTCCTAATAAATTATTATCT 260 Query 6806 GTCGCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGT 6865 | | | ||| |||||||| |||| |||| || | ||||||||||| Sbjct 259 TTAGTTAAGGATCTTTCTCCTTCATACACTTGAATTAAAACACCTGGTTGATTATCAGCA 200 Query 6866 GCCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGG 6925 || | |||||||| | ||| || | ||| || || |||||||| ||| | Sbjct 199 TATGTAGTAAAGATTTGATTTTTTTTGGTTGGTATAGTTGTATTTCTTTCAATTAATTTT 140 Query 6926 GTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAAC 6985 ||||| | |||||| ||||| | || | |||| || || || || | ||| Sbjct 139 GTCATGACACCACCTGCTGTTTCTAAGCCTAATGACAATGGACAGACATCTAATAATAAT 80 Query 6986 AGGTCTTGAACAGAT--TCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCC 7043 | ||||| |||| | | || || || | ||| || || ||||| || | || | Sbjct 79 AAGTCTTTGACAGCTGATGATT--GATCTCCTGATAAAATAGCTGCTTGTACAGCTGCAC 22 Query 7044 CGTATGCGACCGCCTCATC 7062 | ||||| || || ||||| Sbjct 21 CATATGCAACAGCTTCATC 3 >seq2478 Length=1249 Score = 147 bits (162), Expect = 3e-30 Identities = 340/505 (67%), Gaps = 17/505 (3%) Strand=Plus/Plus Query 11234 TTTCTTCACGTCCGTGAACATCAGGTAAAGAAACTTGTATTTTACGATCAAATCTACCGG 11293 |||||| | ||| | |||||||||||| | || | | | | |||||||||||| | Sbjct 180 TTTCTTT-CTTCCATTAACATCAGGTAATGGTACATAAACAATCCTATCAAATCTACCAG 238 Query 11294 GGCGTAATAACGCATCGTCGAGTATATCGATACGGTTTGTTGCACCTATAACAACAAT-- 11351 | | |||||| ||| ||| | |||| || | |||||| ||||||||||| | ||| Sbjct 239 GTCTTAATAAAGCACTGTCTAAGGTATCAATTCTGTTTGTAGCACCTATAACCATAATAT 298 Query 11352 -TTCAGTTTCATTCTCGAAACCATCCATTTCTGTTAATAATTGGTTAATTGTTTGTTCAC 11410 | |||| ||| || ||||||||||| ||||||||| || | ||||| ||| Sbjct 299 GTACAGT---ATTACTAAATCCATCCATTTCAACTAATAATTGATTTAACGTTTGATCAT 355 Query 11411 GCTCATCGTTTGCC--GCA-----AACCCATTC-ATACTTCTTTTCTTACCAATCGCATC 11462 | || || |||||| ||| ||| || | |||||| || |||||| ||||| Sbjct 356 GTTC-TC-TTTGCCCAGCACCATTAACAGATCCTGAACTTCTCTTTCCACCAATTGCATC 413 Query 11463 AATTTCATCTATAAAGATAATACACGGTTGATTTTCACGTGCCAATTCAAATATATCACG 11522 ||||||||| ||||| | |||| | || | | | ||| | |||||| | || Sbjct 414 AATTTCATCAATAAATACAATAGATGGAGCAACTGATCTTGCATGTGCAAATAACTGTCG 473 Query 11523 GACTCTTTTTGCGCCTACGCCTACAAACATTTCAACGAACGATGACCCCGAACACTGAAT 11582 | |||||| || ||| |||||| | ||||| | || || || || | ||| Sbjct 474 TATTCTTTTAGCCCCTTGACCTACATATATTTCTATAAATTCTGGTCCAGAGGTATAAAT 533 Query 11583 AAAAGGAACGGAAGATTCACCCGCTATAGCACGTGCTAAAAGTGTTTTACCTGTACCTGG 11642 | ||||||| || |||| |||| ||| || ||||| | ||||| |||| ||| || Sbjct 534 ATAAGGAACATTAGCTTCAGTTGCTACAGCTCGAGCTAACATGGTTTTTCCTGAACCAGG 593 Query 11643 TTTACCTGTTAATAATGCACCCCTTGGTATTTTAGCACCGGTACCAAAGTACTTTTCTGG 11702 ||| |||||| ||||| |||| ||| ||||||| | || ||||| ||| Sbjct 594 AGGACCAACTAATAAAACACCCTTTGGCATTCTAGCACCCATTTCATGATACTTATCTCT 653 Query 11703 CGCCTTGAGAAAATCAACAATTTCT 11727 || | ||||||||| | |||| Sbjct 654 ATTTTTTATAAAATCAACTACTTCT 678 >seq9932 Length=583 Score = 143 bits (158), Expect = 3e-29 Identities = 294/437 (67%), Gaps = 0/437 (0%) Strand=Plus/Minus Query 183143 GGTATATATGAACTAAATCCGGTACCAATACCTTCAGTTCCATTTACCAAAACGGTCGGT 183202 |||||| ||||| | |||| ||||||||||||||| ||||||||||| | || || Sbjct 440 GGTATAAATGAAGAATATCCTGTACCAATACCTTCACAACCATTTACCAATATTGTTGGA 381 Query 183203 AATATAGGAACATAATAGTCAGGTTCGATTTGTTTACCGTCGTCGTCGAGATAGTTTAAT 183262 | | || | |||||| | ||||| |||| | || || || | | ||| |||||| Sbjct 380 ATAACTGGTATATAATATTGTGGTTCAATTTTCTGTCCTTCTTCATTTAAATATTTTAAT 321 Query 183263 ACTGGATCATCTTTGGGATCAAAAAGTATTCTCGCGTTTTTAGTCAATTTTGTAAATATA 183322 | |||||||| | || ||| | |||| | ||| |||||| ||||||||| Sbjct 320 ATAGGATCATCATATTCATTAAATATACTTCTTGTTGAGCTAGCCAATTTGGTAAATATA 261 Query 183323 TACCTGGTTTGACTCGCGTCTTTACCACCCATGAGACGTGTACCAAATTGACCACATGGT 183382 || || | | | || ||||||||||| | ||||||| || ||||||||| Sbjct 260 TATCTTGCTGCAGATGCATCTTTACCACCTTCTTTTCTACTACCAAACTGTCCACATGGT 201 Query 183383 TCGAGTAAATTAATATTATTCGACCCCGTAAAATTATGTGCTAATTTTACAATTGTATCT 183442 || | || || |||||||| || || ||| | || || | |||| |||||| | | Sbjct 200 TCTAAAAAGTTGATATTATTAGATCCTACAAATGTTTGAGCCATATTTATAATTGTTTGT 141 Query 183443 GCCAAAGAGACTTCACCGTGGTGATACGATGTTTTTTCCGAAACGTATGCGGCTAATTGC 183502 ||||| |||||| || ||||| | | | ||| | || || | ||||||| Sbjct 140 TGTAAAGATGATTCACCATGATGATATGCACTATGTTCAGCAATATAACCAACTAATTGT 81 Query 183503 GCAACCTTCATTTCAGATGTAAGATTCTTTGTGAAACACGCGTATAACACTTTTCGTTGG 183562 |||||||| |||| | | | ||| || | ||||| | ||||| ||||||| ||| Sbjct 80 GCAACCTTACATTCATTTCTTAAATTTCTTTTAAAACATCCATATAAAACTTTTCTTTGT 21 Query 183563 GATGGTTTTAAACCATC 183579 ||||| | ||||| Sbjct 20 CCAGGTTTCCATCCATC 4 >seq6281 Length=778 Score = 138 bits (152), Expect = 1e-27 Identities = 308/455 (68%), Gaps = 12/455 (3%) Strand=Plus/Minus Query 115062 ATAATCACCGACGCGCTTTTCAAAAAAGTTTGTTTTGCCGTCGAGTGATATATTCTCCAT 115121 |||||| |||| | || || |||||||||||||| || | ||||| || ||||| Sbjct 488 ATAATCTGCGACCCTTTTCTCGAAAAAGTTTGTTTTTCCTTGAAGTGAAATTAAGTCCAT 429 Query 115122 AAAATCAAAGGGATTTTTCGTGTTCCAGATTTTATTGTGACCCACTTGTTTTGATAATCG 115181 ||| || |||||||| | | | |||||| | || | || | |||||| Sbjct 428 CCAATTGAATGGATTTTTTGAATGGAAAATTTTAGAGCATCCTAAACATTCTAATAATCT 369 Query 115182 ATCCGCAACATATTCGATATACTCCGACATTTTACCGGAATTCATACCTATGAGACTACA 115241 ||| |||||| |||| ||||| | ||||| | |||||||||||||| | | ||| Sbjct 368 ATCTGCAACAAATTCTATATATTGAGACATAAGTCTAGAATTCATACCTATTAAATCACA 309 Query 115242 CGGAAGTGCGTCCGTAATGAATTCTTTTTCGATTGAAACGGCGTCTCTTATAATTTCTT- 115300 || | || || || || | |||| | | || || ||| | | ||| | || Sbjct 308 TGGTAATGATTCACATATAAAAGATCTTTCAACTTCTACAGCTTCTTTAACAATATTTTG 249 Query 115301 --CAATTGTATTTTGAGATGGTTTGTTTTTTAACATGTTGAATAATTCAACCGC--AAAT 115356 | ||| | || || | |||| || | ||| | | |||| | || | ||| Sbjct 248 TACCATT-TGTTCTGGAA--GTTTATTATCTAATAAACT--ATAAATTAAGCAATTAAAA 194 Query 115357 TCTTGGTGCATACCTTCATCTCGACTTATGAGTTCATTACTAAAACATAAACC-TGGAAG 115415 ||| || | |||||||||| |||||| | |||||||||||| |||||| || || Sbjct 193 TCTGTATGTAGTCCTTCATCTCTACTTATTAATTCATTACTAAATGTTAAACCATGTAAT 134 Query 115416 TAACCCTCTCTTTTTTAACCAAAAAATAGCACAAAAACTACCCGAGAAGAATATACCTTC 115475 | | | | ||||| |||||||||||||||||||| ||||| ||| ||||| ||||| Sbjct 133 TTATTTTGT-TTTTTAAACCAAAAAATAGCACAAAAGCTACCACTGAATAATATTCCTTC 75 Query 115476 AACACACGCAAAGGCTAATAAACGTTCAGCAAATG 115510 |||||| ||| |||| || | ||||||||||| Sbjct 74 AACACATGCATTAGCTACTATCCTTTCAGCAAATG 40 >seq6649 Length=753 Score = 95.1 bits (104), Expect = 2e-14 Identities = 380/582 (65%), Gaps = 15/582 (3%) Strand=Plus/Plus Query 22306 GAAATATATAACCTGGCGGCACAATCACATGTCGGTTTATCATTTAAAATGCCTATATAT 22365 |||||||||||| | || |||||| ||||| || ||| |||||||| ||| Sbjct 123 GAAATATATAACTTAGCTGCACAAAGTCATGTAAAAGTAAGTTTTGAAATGCCTGAGTAT 182 Query 22366 ACATCGGAAGTTGATGGTATAGGTGTGTTGAAAATTCTAGAAGCGATCCGTTTAGCAGGT 22425 || | |||| || | ||||| || | ||| |||||| || | || || Sbjct 183 ACGACTGAAGCAACTGCTTTAGGTACCTTAAGAATATTAGAAGGAATAAGAATATCAAAA 242 Query 22426 CTAACAAAAACGTGTAAATTTTATCAGGCATCTACATCAGAGCTCTACGGTAAAGTA-AA 22484 | | ||| | |||||||||| | ||||| ||||| || | | || ||||| || Sbjct 243 GTTAAAAATAT---TAAATTTTATAATGCATCCACATCTGAATTATTTGGAAAAGTTCAA 299 Query 22485 TGAAACTCCACAAAATGAAAATACACCGTTTTACCCGCGTTCACCATATGGGGTAGCTAA 22544 || || |||||||||| ||| || ||||| || ||||| |||| |||| || Sbjct 300 TGTT-CTATTCAAAATGAAAGTACGCCATTTTATCCAGTATCACCTTATGCTATAGCAAA 358 Query 22545 ATTGATGGGATATTGGGCGACAGTTAATTATAGAGAATCATACGGTATG-TTTGCATGCA 22603 ||| | | ||| ||| | ||||||||||||||||| |||| |||| || | Sbjct 359 ATTATATGCACATTATATTACAATAAATTATAGAGAATCATATAATATGTTTTGTAT-TA 417 Query 22604 ATGGTATAATGTTCAACCACGAATCACCGAGACGGGGTGAAAACTTCGTGACACGAAAAA 22663 |||| || | || || || ||| || ||| | || |||| || || || |||||| Sbjct 418 ATGGCATTTTATTTAATCATGAAAGTCCAAGAAGAGGAGAAACTTTTGTTACCAGAAAAA 477 Query 22664 TAACACTCGGTGTCGCTAATA-TCAGTGCAGGTAAACAAAAAT-GTTTATACCTTGGTAA 22721 | || ||| | || || | ||| | | ||||| || |||| | | ||||| Sbjct 478 TTACTAGAGGTATTGCAAAAATTCAAAAAAAAT-TACAAACATCCATTAT-CTTAGGTAA 535 Query 22722 CCTAGATGCGAAACGAGATTGGGGTCATGCACGCGATTACGTGAAATG-TATGTGGAAAA 22780 ||||| | | ||||||||||||||||| ||||| | | ||| ||||| | Sbjct 536 TATAGATACATATAGAGATTGGGGTCATGCAAAGGATTATG-CATATGCTATGTATCTTA 594 Query 22781 TATTACAACAAGATAAACCGGAAGATTTTGTTATTGCAACAGGCGTAACAACA-ACCGTG 22839 | ||||||||| || | | |||||||||||| || | ||||||| | || Sbjct 595 TGTTACAACAAAATGAGGCAAGTGATTTTGTTATTTGTTCAAATG-AACAACATTCTGTT 653 Query 22840 AGAGAATTTACCCAAAAATCATTTAAATGTATAGGTATAAAT 22881 ||||||||| ||| ||| ||| || | || |||| || Sbjct 654 AGAGAATTTTGTGAAATATCCTTTTCATTTGTAAATATACAT 695 >seq170 Length=2847 Score = 86.0 bits (94), Expect = 8e-12 Identities = 213/321 (66%), Gaps = 8/321 (2%) Strand=Plus/Minus Query 11368 AAACCATCCATTTCTGTTAATAATTGGTTAATTGTTTGTTCACGCTCATCGTTTGCC--- 11424 || |||||||||||| || | ||| || | ||| | ||| | ||||| || | Sbjct 1827 AATCCATCCATTTCTACTAGCATTTGATTTAATGTGTTTTCTCTTTCATCATTACCTCCA 1768 Query 11425 ---GCAAACCCATTCATACTTCTTTTCTTACCAATCGCATCAATTTCATCTATAAAGATA 11481 ||||| ||| | |||||| | || | |||||||||||||||||||| || Sbjct 1767 CCAGCAAAACCACCTTTTGATCTTTTTCTCCCGACAGCATCAATTTCATCTATAAAAATT 1708 Query 11482 ATACACGGTTGATTTTCACGTGCCAATTCAAATATATCACGGACTCTTTTTGCGCCTACG 11541 ||| | ||| || || | ||| |||||| || || || ||| || |||| Sbjct 1707 ATAGAAGGTGCATGTTTTCTTGCTTGAGCAAATAATTCTCGAACCCTTGATGGACCTATA 1648 Query 11542 CCTACAAACATTTCAACGAACG-ATGACCCCGAACACTGAATAAAAGGAACGGAAGATTC 11600 || ||||| | ||||| || | ||| | || | | || ||| ||||| | ||| Sbjct 1647 CCAACAAAAACTTCAATAAAATCACTACCGCTAATATTAAA-AAATGGAACATTTGCTTC 1589 Query 11601 ACCCGCTATAGCACGTGCTAAAAGTGTTTTACCTGTACCTGGTTTACCTGTTAATAATGC 11660 || |||| ||| |||| | ||||| || |||||||| ||| ||||||||| Sbjct 1588 TCCAGCTACAGCTTTGGCTAGTAAAGTTTTTCCAGTACCTGGAGCACCACATAATAATGC 1529 Query 11661 ACCCCTTGGTATTTTAGCACC 11681 ||| | |||||||||||||| Sbjct 1528 ACCTTTAGGTATTTTAGCACC 1508 >seq5544 Length=836 Score = 82.4 bits (90), Expect = 1e-10 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 115734 ATTTTCAAAAACTATACCATCAGAACCAGCaaaaaaaGCTAAAATATATTTTATAAAATG 115793 ||| || || |||||||||||| | |||||||| ||||| | || ||||||||||| Sbjct 612 ATTCTCTAATACTATACCATCACTTGCTGCAAAAAATGCTAACACATGCTTTATAAAATG 553 Query 115794 TTTTTCATTATCACTTAATTCATTCCAATCATCCATATCTTTGGAAAAGTCTATCTCTTC 115853 ||| ||||| ||| | |||| | |||| | | ||| | || || || || ||||| Sbjct 552 TTTCTCATTGTCATTCAATTTCTCAAAATCTTTTAAATCGCTAGATAAATCAATTTCTTC 493 Query 115854 AGCGGTCCAATTTGACATTTGGGCCTTTTTATACAAAGTCCATAAATTTTCATGTTCTAT 115913 || |||||| ||| || || || || || ||| ||| | | || | ||| Sbjct 492 TGCTGTCCAAAATGAAGCTTCAGCTTTCTTGTAAAAATCCCAAACTTCAGGATATAATAT 433 Query 115914 TGGAAATACAGTAAA 115928 |||| ||| |||||| Sbjct 432 TGGATATAAAGTAAA 418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634928318995040